Winkia neuii subsp. anitrata: PIG85_07320
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Entry
PIG85_07320 CDS
T08771
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
wne
Winkia neuii subsp. anitrata
Pathway
wne03030
DNA replication
wne03410
Base excision repair
wne03420
Nucleotide excision repair
wne03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
wne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PIG85_07320 (ligA)
03410 Base excision repair
PIG85_07320 (ligA)
03420 Nucleotide excision repair
PIG85_07320 (ligA)
03430 Mismatch repair
PIG85_07320 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
wne03032
]
PIG85_07320 (ligA)
03400 DNA repair and recombination proteins [BR:
wne03400
]
PIG85_07320 (ligA)
Enzymes [BR:
wne01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PIG85_07320 (ligA)
DNA replication proteins [BR:
wne03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PIG85_07320 (ligA)
DNA repair and recombination proteins [BR:
wne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PIG85_07320 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PIG85_07320 (ligA)
MMR (mismatch excision repair)
DNA ligase
PIG85_07320 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PIG85_07320 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
WCE45461
UniProt:
A0AB38XME7
LinkDB
All DBs
Position
complement(1567017..1569416)
Genome browser
AA seq
799 aa
AA seq
DB search
MSEHEREEQESAQQLHAELTDQIEAARYQYYNQEAPELSDARYDELFARLTRLEEQHPEL
VDANSPTQSVGGSPEAAFTPFTHLERMLSLDDVFSLDEVSLWYQRMQKAAGTSEVPVTCE
VKVDGLAISLLYEDGELTRATTRGDGTVGEDVTANIATIKQIPKRLHGEDLPRQIEIRGE
IFLPLKAFADMNQKAALFNKEQEDLKAAGKKARPKQKIFVNARNAAAGSLRQKDPKVTAS
RPLRMITHGLGFVDWANGPQTQHGWYSQLKEWGLPVSEETERVYSLQQIYDYIDRIGKKR
PQISHGIDGVVVKVDQISLQKQLGQTSRTPRWATAYKFPPVEVHTRLLDIRVHVGRTGRV
TPYGLMEEAFVDGSNVSRATLHNAEEVVRKGVLIGDTVVLRKAGDVIPEIVGPVVAARDG
SEREFVMPDTCPSCGAKIAAQKDGDVDLRCPNQAYCPAQITERISHLGSRGAFDIEGLGD
ESALALTQPEANRDEVAASLVQGQKVLLEDGNVLQLREAEDLPHAEQILKAEALLPAPAA
PILSNEAPIFSLTSEDLRDVMTWRKKKDCWVQVRYFWSKGEKLSAAAAQQAGSVFGPPKE
GKTVKSLMAELEAAKAQPLWRVLVGLSIRHLGPTASRALASHFGSMDALRSASVEEIAQV
EGVGAVIAQSVKDWFSEPWHVEIVQAWEEAGVRMADEVEASRPQQTLAGMTVVVSGKMPG
YTRESAKEAIESRGGKAAGSVSKKTSVVVAGDGAGSKATKAESLGIPVLSDEDFDSLLQS
GRELLVSRGLLEDVSEGTD
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagcacgagcgcgaagaacaagaatctgcccagcagctgcatgcagagctgaca
gaccagattgaagctgcgaggtaccagtattacaaccaagaagcccctgagctttcggat
gctcggtacgacgaattattcgcgcgccttacacgactggaggaacagcatcctgaactc
gtggacgcgaattccccgacccagtcggtagggggtagccctgaggcagcgtttactccc
tttactcacctggagcgcatgttgtctctggacgacgtattttcactcgatgaagtttca
ctgtggtaccaacgcatgcagaaggctgcgggcactagtgaagtgccggttacgtgtgaa
gtgaaggtagatgggcttgccatctcgttgctatacgaggacggcgaactcacgcgtgcc
accacccgtggagatggcacggttggcgaagacgtgactgcgaatatcgctactatcaag
cagattcctaaacggttgcacggagaggatctgccgaggcagatcgagattcgcggagag
atttttctgccgttgaaggccttcgctgacatgaaccagaaggccgctctgttcaataag
gagcaagaggatctgaaagccgctggtaagaaggcaaggcctaaacagaagatttttgtg
aatgcccggaatgctgctgccgggtcactaaggcagaaggatccaaaagttactgcttct
cgcccgttgcggatgattacgcacggcttggggtttgtggactgggcaaatggaccacag
actcagcacggctggtattcccagttgaaggaatggggattgccagtttctgaggagact
gagcgggtttactctttgcaacagatttatgactacatcgaccggattgggaagaagcgg
ccgcagatttcgcacggtattgatggagtggtcgtaaaggtcgaccaaatatcgctccaa
aagcaattggggcagacctcccgtacgccgcgatgggctaccgcgtataagtttcctccg
gtagaggtccatacccgtctacttgatataagagtgcacgtggggcgcacaggcagggtc
accccgtatggacttatggaagaggcttttgttgacggttctaacgtgtctcgggcaacc
cttcacaatgcggaggaggtagttcgcaagggggtacttataggagacactgtggtgctt
cgtaaggcgggtgatgttattcccgagatcgttggcccggtagtggcagcgagagatggt
tccgaacgtgaatttgtcatgcctgatacctgtccgtcctgcggagctaagatcgcggcg
cagaaggatggggacgtggatcttcggtgccctaaccaggcctactgtcctgctcagatc
acagagcggatatcgcatttaggttctaggggagcatttgacattgaagggctaggagac
gaatcagcgcttgcgcttacccagccggaagccaatagggacgaggtggcggcttcgcta
gtgcagggacagaaggtgttactggaggacggcaacgtattgcaattgcgggaggcggag
gatcttccgcatgccgagcagatcttgaaggccgaggccctgctgcctgcccccgctgct
cccatcttgtccaatgaggctccgatttttagtcttacttcggaagacttgcgggacgtg
atgacttggcggaagaagaaggattgctgggtccaagtgcgctatttctggtcgaagggg
gaaaagctgtcggccgctgcggcgcagcaagccggctctgtcttcgggccgccgaaggaa
gggaaaactgtcaaatcactgatggcagagctcgaggctgccaaagcgcaaccgctgtgg
cgggtgctagtggggttgtcgattcgtcatctaggtcctactgcttcgcgagcattagct
agccatttcggttctatggatgccttgcgttccgcttctgttgaagaaattgcccaggtc
gagggcgtaggtgcggttatcgcgcagtcggtcaaggactggtttagcgaaccttggcat
gtagagatcgtgcaggcctgggaagaggctggggtccggatggcagacgaagtcgaggct
agccgtcctcaacaaaccctggcggggatgaccgttgttgtttcgggcaagatgccgggt
tatacccgtgagtctgctaaggaagcgatcgagtcgcggggcggtaaggccgccggatcg
gtgtcgaaaaagactagcgttgtggtagccggtgatggggcaggatcgaaggctacaaag
gcagagtctttagggattccagtgctttcggatgaagacttcgatagcttattgcagtcg
gggcgtgagcttcttgtaagtcgcggtttactagaggatgtatcggaggggacggactaa
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