Weissella soli: WSWS_00674
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Entry
WSWS_00674 CDS
T06066
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
wso
Weissella soli
Pathway
wso03030
DNA replication
wso03410
Base excision repair
wso03420
Nucleotide excision repair
wso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
wso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WSWS_00674 (ligA)
03410 Base excision repair
WSWS_00674 (ligA)
03420 Nucleotide excision repair
WSWS_00674 (ligA)
03430 Mismatch repair
WSWS_00674 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
wso03032
]
WSWS_00674 (ligA)
03400 DNA repair and recombination proteins [BR:
wso03400
]
WSWS_00674 (ligA)
Enzymes [BR:
wso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WSWS_00674 (ligA)
DNA replication proteins [BR:
wso03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WSWS_00674 (ligA)
DNA repair and recombination proteins [BR:
wso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WSWS_00674 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WSWS_00674 (ligA)
MMR (mismatch excision repair)
DNA ligase
WSWS_00674 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WSWS_00674 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
HHH_8
RNA_pol_A_CTD
DUF4796_N
DUF6085
DUF7399
Motif
Other DBs
NCBI-ProteinID:
AOT56311
UniProt:
A0A288QWV7
LinkDB
All DBs
Position
705947..707974
Genome browser
AA seq
675 aa
AA seq
DB search
MSIDIENLTEDQARVHVSTLQAQLKQWAQEYYENDAPSVEDAVYDEAYNQILALEARFPA
LVTADSITQQVGGRQLKNDLPKVAHPIPMLSLGDVFSLNALMDWVATTEKATQPHLDFNA
ELKIDGLAISLIYEKGTLVQASTRGDGNIGEDVTANVLQIDAVPKQLNEPLSVEVRGEVY
MPKDAFVTLNEKRETEGLPTFANPRNAAAGSLRQLDARVTKARQLAVFLYNAVEAETTLG
VSTQAALLTRLAALGLPTNPTNAVVTDQASVEAYLAKYTAVRDDLAYGIDGIVVKVNDLA
LHAELGNTVKVPRWAIAYKFPPEEAETIVRDIEWTVGRTGVVTPTAIMDPVQLAGTTVSR
ASLHNPDYLLAKDIRLGDTVTLHKAGDIIPEVGQVILPKRPATATEAYPIPAFCPACGQP
LVHTADEVALRCINPFCPAQIQESVTHFASRDAMNIDGLGPKIVAQLLAKNLIHNVADLY
KLTFDELTGLEKFGVTSANNLLEALANSKENSVERLLFGLGIRNVGAKAAKVIAAKYGDL
TAIAAATADDIADLPGLGQTIGQSIEQYFAEAPTQALVREFQELGVNLKFISDGPVATDT
IFSGKKVVLTGRLTMFSRKDASDWLERQGAIVSGSVSKKTDLLIAGADAGSKLTKAQELG
VEIWSEAQFRDTMEA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattgatattgaaaaccttacagaagaccaagcccgtgttcacgtgagcacgtta
caagctcaattgaagcaatgggcacaagaatattatgaaaatgatgcgccctcggttgag
gatgcggtctatgacgaagcctacaatcaaatactcgcgttggaagcgcgttttccagca
ttggtcacggccgactcaattacgcaacaagtgggtggtcgccaattaaaaaatgattta
ccaaaagtggcgcatcccatcccaatgttgtcactgggtgatgttttttccttgaatgcc
ctcatggactgggtagcgacgaccgagaaggccacgcaaccccatctggatttcaatgcc
gaactgaagatcgatggcttagcaattagtttaatttacgaaaaggggaccttggtgcaa
gcctcaacccgtggcgatgggaatattggggaagacgtcactgccaatgttttacaaatt
gacgccgtacccaaacagttaaatgaaccactgtcagttgaggtacgtggggaagtctac
atgccaaaggacgctttcgtcacgttaaatgaaaagcgtgagactgagggcctgccaacc
tttgctaatccccgcaacgctgcggctggttcattgcgccaattagatgcccgtgtcacc
aaggcccggcaactagctgttttcctctacaacgcggttgaagctgaaacaacattaggg
gtcagcacacaggctgccttactcacgcgcttggcggcgttagggttgccgacgaatcca
acgaatgcggtcgtcactgaccaagcgtccgtcgaggcgtatctcgcaaaatacaccgcc
gtccgtgatgacttggcttatggcatcgacggcattgtcgtgaaagtgaatgacttggcg
ttacatgcagaactgggcaatacggttaaagttcctcgttgggcgattgcgtataaattc
ccacctgaggaagcagaaacgattgtccgtgatattgagtggaccgtgggccgcaccggc
gtcgtgaccccaaccgcgatcatggatccggtgcaattagctggtaccacggtgtcacgt
gcttcattacataatcccgattatctcttggcaaaggatatccggcttggcgatacggtc
acgttacataaagccggggatattattccagaagttgggcaagttattttgcccaagcga
ccagctacggcgacggaggcctatcccattccggctttttgtccggcttgtggtcaaccc
ttagtgcataccgctgatgaagtggcgttgcgttgtatcaatccgttctgtcccgcccaa
attcaagagtctgtaacccactttgcgtcacgtgacgcgatgaatattgatggtttgggg
cccaagattgtggcccagttattagcgaaaaacttgattcataatgtcgccgatttatat
aaattaacttttgatgaattgaccggccttgaaaaatttggcgttacgagtgccaataac
ttattagaagccttggctaattccaaagaaaattctgtggaacgcttactatttggtctc
ggtattcgcaatgtcggtgcaaaagctgctaaagtgattgcggccaaatatggcgattta
acagccattgcggccgcgacggctgatgatattgcagacctgcccgggctcggtcaaacc
atcggtcaaagcattgaacaatactttgctgaagcccccacacaagcactggtgcgtgaa
tttcaggaattaggggtcaatctcaagttcatatccgatggacccgtggccactgatacg
atctttagcggtaaaaaggtggtcttaaccggtaggttgactatgtttagtcgcaaggat
gcgagtgattggcttgaacggcaaggtgccattgtgagtggatccgtttccaaaaagacg
gacctcttgatcgccggtgcggatgctggttctaagttgacgaaagcccaagaacttggc
gtcgaaatctggtcggaagcccaatttcgtgataccatggaagcatag
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