Wolinella succinogenes: WS1790
Help
Entry
WS1790 CDS
T00146
Symbol
LIGA
Name
(GenBank) DNA LIGASE POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
wsu
Wolinella succinogenes
Pathway
wsu03030
DNA replication
wsu03410
Base excision repair
wsu03420
Nucleotide excision repair
wsu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
wsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WS1790 (LIGA)
03410 Base excision repair
WS1790 (LIGA)
03420 Nucleotide excision repair
WS1790 (LIGA)
03430 Mismatch repair
WS1790 (LIGA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
wsu03032
]
WS1790 (LIGA)
03400 DNA repair and recombination proteins [BR:
wsu03400
]
WS1790 (LIGA)
Enzymes [BR:
wsu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WS1790 (LIGA)
DNA replication proteins [BR:
wsu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WS1790 (LIGA)
DNA repair and recombination proteins [BR:
wsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WS1790 (LIGA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WS1790 (LIGA)
MMR (mismatch excision repair)
DNA ligase
WS1790 (LIGA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WS1790 (LIGA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CAE10810
UniProt:
Q7M8A0
LinkDB
All DBs
Position
1689816..1691768
Genome browser
AA seq
650 aa
AA seq
DB search
MNPDQYSQAIERLNAWAHAYYVLDAPLATDEEYDQLYHEALAFERQNPERIHPASPTQRI
GGAPLEGFQKASHLERMWSLEDVFDFGELKSWAERLYKQFPHATFVCDPKFDGASLNLLY
EEGRLVRAATRGDGLIGEDVTQNARTIPSIPLSIPLLERIEIRGEVVIPKEDFEKLQEER
LRENESPFANPRNAAAGSLRQLDPAITAKRKLRFIPWGVGAHPFKTGSFFEIMKSLESYG
FIRSPERTRCHNIHEIERVYALLVSERSTHPVMLDGMVVRVDEIAYQRELGYTIKAPRFA
CAYKFPAIEKKARLLSITLQVGRSGVVTPVANLEPVEIEGAMISRATLHNFDEIKRLDVR
EGDWVSLIRSGDVIPKIIQPFAHLRSGEEKPLSRPTHCPECGSELLVEEVLIKCQNLSCP
ARIKNSLIHFASKKALNIDGLGEKIIEQLFEAGLIKEFEDLFSLTKESLLSLEGFKEKKA
QNLLDAIQGVRGCDLWRFINALGIEHIGEGAAKKLSHAFGLAFHLQNHEAIIGLEGFGEE
MAQSLLEFCRVNHERIEHLLGLIEPLAPIQLTPQDSPIAGKSFVITGTLSAPREHFVELL
TSLGAKVVSSVSKKSDFLLYGESAGSKLEKARELGVRCVNEEELGEILES
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccgaccaatattcccaagccatagagcgtctcaatgcgtgggcacacgcctac
tatgtgctggatgcaccccttgccactgatgaggagtatgaccaactctatcacgaagcg
ctcgcttttgagcgccaaaacccagagcgcatccaccccgcctcccccactcaaagaatc
ggaggagcccctttggagggatttcaaaaggcctctcacttggagcgaatgtggagcttg
gaggatgtttttgattttggtgagctcaaatcttgggcggagcgcctctacaagcaattc
ccgcatgccacttttgtctgcgaccccaagtttgatggggcgagcctcaaccttctttat
gaagaggggaggctggtacgtgccgccacaaggggtgatgggcttattggcgaagatgta
actcaaaacgcccgcacgattccctccatccctctctctattccccttttagagcgcatt
gaaattcgcggagaggtggtgattcctaaagaggattttgagaagctccaagaagagcgt
ctcagggaaaacgaatccccttttgccaatccaagaaatgccgcagcaggcagtctgcgc
cagctcgatcccgccatcacagccaagcgcaaacttcgattcatcccttggggggtgggg
gcgcatccttttaagacggggagtttttttgagatcatgaagagcctagaatcgtatgga
ttcatccgctcacctgagcgcactcgctgccataatattcacgagattgagagagtctat
gcactcctagtgagcgaacgcagcacccaccctgtgatgctagatgggatggtggtgagg
gtcgatgagatcgcctaccaaagagagcttggctacaccatcaaagccccacgctttgcc
tgcgcctacaaattccccgccatagagaaaaaggctaggcttcttagcatcacgctccaa
gtggggcgaagtggcgtggtgacgcccgtggccaatctagagcccgtggagatcgaaggg
gcgatgatctctcgcgccactctccataattttgatgagatcaagcgccttgatgttcgc
gagggggactgggtgagccttattcgcagcggagatgtgatccctaagatcatccagccc
ttcgcccatttgcgaagtggcgaggagaagcctctctctcgccccacccactgccccgaa
tgcgggagtgagctgctggttgaagaggtgctcatcaagtgccaaaacctcagctgtccc
gctagaatcaaaaactctctcatccattttgccagcaaaaaggcactcaatatagatggc
ttaggagagaagatcattgaacaactttttgaagcagggctaatcaaagagtttgaagat
ctcttctccctcactaaagaatcgctcctatccctagaggggtttaaagagaaaaaggcg
caaaacctgcttgatgctatccaaggggttaggggttgcgacctatggcgattcatcaac
gccctaggaatcgagcatattggcgagggtgcggctaagaaactctctcatgcttttggg
ctagccttccacctccaaaaccacgaggccattatcggcctagagggttttggagaggag
atggcgcaatcactcctggagttttgccgtgtcaatcatgagcgaatagagcatctccta
gggctcatagagccgcttgcccccatacaactcacgcctcaagattcccctatagcgggc
aaaagctttgtcatcacaggcactctctccgcccccagagagcactttgtggagcttctc
acctcgctaggagccaaggtggtctctagtgtctccaaaaagagtgactttctcctctat
ggagagagtgcggggagcaagctagagaaggccagagagctaggcgtgagatgcgtgaac
gaggaagagctcggggagattcttgaatcttaa
DBGET
integrated database retrieval system
