Weissella viridescens: IE337_04265
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Entry
IE337_04265 CDS
T06991
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
wvr
Weissella viridescens
Pathway
wvr03030
DNA replication
wvr03410
Base excision repair
wvr03420
Nucleotide excision repair
wvr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
wvr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IE337_04265 (ligA)
03410 Base excision repair
IE337_04265 (ligA)
03420 Nucleotide excision repair
IE337_04265 (ligA)
03430 Mismatch repair
IE337_04265 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
wvr03032
]
IE337_04265 (ligA)
03400 DNA repair and recombination proteins [BR:
wvr03400
]
IE337_04265 (ligA)
Enzymes [BR:
wvr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IE337_04265 (ligA)
DNA replication proteins [BR:
wvr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IE337_04265 (ligA)
DNA repair and recombination proteins [BR:
wvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IE337_04265 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IE337_04265 (ligA)
MMR (mismatch excision repair)
DNA ligase
IE337_04265 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IE337_04265 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
OmpA_membrane
Motif
Other DBs
NCBI-ProteinID:
QOD85424
LinkDB
All DBs
Position
849774..851780
Genome browser
AA seq
668 aa
AA seq
DB search
MSDKANIQAKIQTLESQLKQWAQEYYENDAPSVEDARYDQTYAELQALAQEHPELIADDS
ITKQVGGARLKNDLPKVNHPVPMLSLGDVFSIDELQEWMTTAQKQVATPLTYNAELKIDG
LAISLIYEAGKLIQASTRGDGTIGEDVTANVLQIEEIPQTLTEPISVEVRGEVYMNKANF
VALNQQREHDGLATFANPRNAAAGSLRQLDPAVTKARKLSAFLYQAVNPIDQLGVQTQSD
LLSRFTQLGLPTNHENAVVQTQSEALDYINQADHQRDALTYGIDGIVFKINDLALQAEYG
NTIKVPRWAIAYKFAPEEAETVVHDIIWTVGRTGAVTPTAIMDPVQLAGTTVSRASLHNP
DYLQAKDIRIGDTVLLHKAGDIIPEISEVVLGKRPEASEPYQIPTLCPACEQELVHVDGE
VVLRCINPLCPAQIQESITHFASRQAMNIDGLGPKIVTQLLEHNLVHEVSDLYRLSLDDL
EGLDKFGAVSANNLVLAIANSKQNSVERLLFGLGIRNVGAKVAKLISAQFGSLPAIAQAS
ADEIAAIPGIGLVIGHSIAQYFATAQAQDLLNDFENLGVNMSYLSGTPVQTDTALSGKKV
VITGKLTAMTRPEMTEWLESQGATVTNSVSKKTDILIAGEDAGSKLTKAQELGIEIWSED
QLRANMEQ
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataaagcaaacattcaagccaaaattcaaaccctggaatcacagctcaagcaa
tgggcacaggagtattatgaaaatgatgccccaagtgtcgaggatgctcgttacgaccaa
acttatgctgaattacaggccttagcacaagaacatcctgaactaattgcggatgattca
attacaaagcaggtggggggcgcacgcctcaaaaatgatttaccgaaggttaatcatccc
gtacctatgttatctcttggtgatgtcttttcaatcgatgaactccaagagtggatgacc
accgcgcaaaagcaagtagcgacacctttaacgtacaatgcagaattgaaaattgacgga
ttggcaattagtctaatttatgaggctggaaaattgattcaagcttcaacccgtggtgat
ggtaccattggtgaagatgtaactgcaaacgttttacaaatcgaggaaatcccacaaacg
ctaactgaaccaatttcagtcgaagtccgtggtgaggtttacatgaataaggcaaacttt
gtcgccttaaaccaacaacgtgaacatgatggactcgcaacgtttgcaaacccacgtaat
gcagcggctggttcattgcggcaacttgatccagcagttaccaaggcacgaaagctatct
gctttcttataccaagctgttaatccaattgaccaacttggcgttcaaacccagtcggat
ctattgagccgatttacgcagctcggtttaccaactaaccatgaaaatgctgtcgttcag
acacaatctgaagccctcgattacattaatcaagcggatcatcagcgcgatgctttaacc
tacggtattgacggaattgtctttaaaattaacgatttagcactacaggctgaatacggc
aacacgattaaggtcccacgctgggcaatagcatataaatttgcacctgaagaagcagaa
acggtagttcacgatattatttggacagttggtcgtactggggcagtgacaccaacagca
attatggatccggttcaattagctgggacaactgtgtcacgtgcttcattgcataatccg
gattatttacaggcaaaagatattcggattggggatacagtcttattacataaggctggt
gatatcatccccgagattagtgaagtcgtcttaggcaagcgaccagaggcttcagaacca
tatcaaatcccaactttgtgcccagcttgtgagcaggaactagttcacgttgatggcgag
gttgtcctacgttgtatcaacccgctttgtcccgctcaaattcaagaatcaattacccac
tttgcctcacgccaagccatgaatatagacggactcggtccaaaaattgtcacacaatta
ttggaacataatttagtccacgaagtttcagacttataccggttatccctagatgattta
gaaggacttgataaatttggagctgtttcagcaaacaatcttgtcttagcaattgctaat
tctaaacaaaattcagttgaacgcctcttgtttggcttgggtatccgtaatgttggtgca
aaagttgctaagttaatttctgcacaatttggctcattacctgcgattgcacaagcatca
gccgatgaaattgctgccattccaggcattggattggttatcggtcacagtattgcccaa
tattttgcaactgcacaggcacaagatctcttaaatgatttcgaaaaccttggcgtaaac
atgtcatatttgagcggaacacctgtccagactgatacagcactgagtgggaaaaaggtc
gttattacaggaaaactaacggccatgacccgtccggaaatgacggagtggcttgaatcg
caaggcgctacggttacaaacagtgtttcgaagaaaaccgatattttaattgctggggaa
gatgctggctcaaaattgacaaaagcacaggaattaggcattgaaatttggtctgaggac
caattacgtgctaatatggaacagtaa
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