Xanthomonas citri pv. citri 306: XAC1627
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Entry
XAC1627 CDS
T00084
Symbol
lig1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xac
Xanthomonas citri pv. citri 306
Pathway
xac03030
DNA replication
xac03410
Base excision repair
xac03420
Nucleotide excision repair
xac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XAC1627 (lig1)
03410 Base excision repair
XAC1627 (lig1)
03420 Nucleotide excision repair
XAC1627 (lig1)
03430 Mismatch repair
XAC1627 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xac03032
]
XAC1627 (lig1)
03400 DNA repair and recombination proteins [BR:
xac03400
]
XAC1627 (lig1)
Enzymes [BR:
xac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
XAC1627 (lig1)
DNA replication proteins [BR:
xac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XAC1627 (lig1)
DNA repair and recombination proteins [BR:
xac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
XAC1627 (lig1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XAC1627 (lig1)
MMR (mismatch excision repair)
DNA ligase
XAC1627 (lig1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XAC1627 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AAM36495
UniProt:
Q8PM07
LinkDB
All DBs
Position
1873130..1875631
Genome browser
AA seq
833 aa
AA seq
DB search
MTASPDPAQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADS
PTQRVGHLAASRFAEVRHAMPMLSLGNAFSDEEVTEFVRRISERLEVRQPLFSAEPKLDG
LAISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPRVLEVRGEVYMPR
AAFEAYNAQMRAQGGKILANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQA
HSAILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGEARDGLAFDIDGVVYKLDDLAGQR
EMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATL
HNADQIARLDVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSEIVRE
EGQAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVKGVADLYLLS
VDQLLQLRLISTADSPHAFLREAREHLASGAYAQLEASVVGIGVDLAGERDVPQTWQADL
LRAGLPSFDWNRKKIATKWAENLIEAIEISRDTTLERFLFALGIEHVGESTAKALSAWFG
DLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQKAIDHLLARKVRIGDTHPPSPKL
RGELSLANLLEDLEIPKVTPIRAAQIATAFGSIDALRNGGPEPLVEAGVPQSVAESLAAW
LLVPANDTLAVNAQRKLSELLAMLPEAGEEKTGPLDGQTVVITGTLAALTRDAAKQRLEA
LGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGDHGQQP
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgactgccagcccggatcccgctcagcgcatcgatgccctgcgccgtcgaatcgaagac
gccaactaccggtatcacgtactcgacgagccgcagatggccgatgccgattacgacaag
ctgatgcgcgagcttgaggccttggagcgcgcgcacccggaattggccagcgccgattcg
ccaacccagcgcgtcggccatctggccgcctcgcggtttgccgaagtgcggcatgccatg
ccgatgctgtcgttgggcaatgccttcagcgatgaggaagtgaccgagttcgtgcggcgc
atcagcgagcggctggaggtcagacaaccgctgttttcggccgaacccaaactcgatggc
ctggcgatcagcctgcgctacgaaaatggcgagttcgtgcagggcgccacgcgcggcgat
ggcgccaccggcgaggatgtcagcgccaacctgcgcaccgtcaaagcgattccgttgcgt
ctgcgcggcgagggttggccgcgggtgctggaagtgcgcggcgaggtctacatgccacgt
gctgcgttcgaagcctacaacgcgcagatgcgtgcccagggcggcaagatactggccaac
ccgcgcaatggcgcggccggctcgctgcggcagctggatgcgcgcatcaccgcgcagcgc
ccgctgagcttcttcgcctacggcgttggcgaagtgagcgaaggcgcattgcctcaggcc
cattcggcgatcctggcgcagctgcgcgcgtggggttttccggtcagcgcgctggtcgag
gtcgtgcagggcagcgatggtctgctggcgtattaccagcgcatcggtgaggcgcgcgat
ggcctggccttcgatatcgatggcgtggtgtacaagctcgacgatctggccgggcaacgc
gaaatgggcttcgtctcgcgcgcgccgcgttgggcgatcgcgcacaagttccccgcacag
gagcagtccaccacggtggaggcgatcgagatccagatcggccgcaccggtgcggccacg
ccggtggcgcgcctgaagccggtgcatgtggccggggtgatcgtcaccaatgccacgctg
cacaacgccgaccagatcgcgcggctggatgtgcgcgtgggcgacacggtgatcgtgcgc
cgcgccggtgatgtcatccctgaagtggccgcggtggtggccgaccagcgcccgcccggc
acccaggcctggcagatgcccacgcagtgcccggtgtgcggttcggagatcgtgcgcgaa
gaaggccaggcggtctggcgctgttccggcgagttgacctgcccggcgcagcgcaaggag
gcgtttcggcatttcgtctcgcggcgcgcgatggatgtggacggcctgggcgaaaaattc
atcgaagtgctggtcgacagtggcctggtgaagggcgtggccgacctgtatctgctgagc
gtggaccagctgctgcaattgcgcctgatcagcacggccgacagcccgcacgcgttcttg
cgcgaggcgcgcgagcatctggccagcggtgcatatgcgcagctggaagccagcgtggtc
gggatcggcgtggacctggccggggagcgcgacgtgccgcagacctggcaggccgatctg
ctccgcgcaggcttgccgagcttcgactggaaccgcaagaagatcgccaccaagtgggcg
gagaatctgatcgaggcgatcgaaatatcgcgcgataccacgctggagcgttttctgttt
gcgctgggcatcgagcatgtgggcgaaagcacggccaaggccttgtcggcctggttcggc
gatctggaattgatccggcatctgccgtggccgctgttcaagcgcgtgccggatatcggc
ggcgaagtggcgcgctcgctggggcacttcttcgatcaggccggcaatcagaaggccatc
gatcatctgctggcgcgcaaggtgcgcatcggcgacacccatccgccttcgccgaagctg
cgcggcgagctgagcttggccaatttgctggaggacctggagattcccaaggtgacgccg
attcgcgccgcccagatcgcgactgcgtttggttccatcgatgccctgcgcaatggcggt
cccgagcctctcgtcgaagccggtgtaccgcagtcagtggccgagtcgctcgcggcctgg
ctgttggtgccggccaacgatacgctcgcggttaatgcccagagaaagctttccgagctg
ctggcgatgctgccggaggccggcgaggaaaagaccggcccgctcgatggccagaccgtg
gtcatcaccgggacgctggctgcgctgacgcgcgatgcggccaagcagcggctggaagcg
ctgggcgccaaggtcgccggtagcgtctccaagaagaccgcgtttctggtggccggcgaa
gaagccggttccaagctcgacaaggcgcaatcgctgggcgtggagatctgggacgaagcg
cgtttgctggccttcctgggcgaccacggccaacagccatga
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