Xylocopilactobacillus apis: KIMC2_10100
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Entry
KIMC2_10100 CDS
T09716
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xak
Xylocopilactobacillus apis
Pathway
xak03030
DNA replication
xak03410
Base excision repair
xak03420
Nucleotide excision repair
xak03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KIMC2_10100 (ligA)
03410 Base excision repair
KIMC2_10100 (ligA)
03420 Nucleotide excision repair
KIMC2_10100 (ligA)
03430 Mismatch repair
KIMC2_10100 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xak03032
]
KIMC2_10100 (ligA)
03400 DNA repair and recombination proteins [BR:
xak03400
]
KIMC2_10100 (ligA)
Enzymes [BR:
xak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KIMC2_10100 (ligA)
DNA replication proteins [BR:
xak03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KIMC2_10100 (ligA)
DNA repair and recombination proteins [BR:
xak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KIMC2_10100 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KIMC2_10100 (ligA)
MMR (mismatch excision repair)
DNA ligase
KIMC2_10100 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KIMC2_10100 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
HHH_5
BRCT_2
zf-NADH-PPase
Methyltrn_RNA_3
AphA_like
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
BDR56448
LinkDB
All DBs
Position
complement(1064161..1066167)
Genome browser
AA seq
668 aa
AA seq
DB search
MNNSDYENYIKLKDQLNIYRRQYYTEDAPTVQDFEYDRLYQELLKVESAHPEWVTNDSPS
QNVGGAINSAFPKFRHEIPMLSMDDVFSLEESQASAERIKKFVNQTDVEFNLELKIDGLA
LSLIYENGRLVKGSTRGDGFVGEDITPNIFQIDDVPKTIPLKERIEVRGECYLGKDSFAE
LNNKRLEDGKSTFANPRNAAAGSLRQLDSSITKSRHLQTFIYFVIEPENYGLKTQSEALK
QLQEWGFATNNQNRVVNDFKEVQNYIDEYQEKRLDLPYNIDGIVFKVNDFKLQSLLGNTV
KVPRWEFAYKFPPIEAHTHLRTIEWTVGRTGVVTPTAVMDPVAVAGTTVRRASLHNFDFM
KEKDIQLNDDVYIYKAGDIIPEVDRVDLKARKEKINYQEPSYCPDCGSKLVHLEEEVALR
CINPMCPAQVRAHIEHFASRDAMNILGLGPKVVEKLYDLGLVATIPDLYKLDEAKLHQVS
GFQEKSVIKLLDNINASKSRSLEKILYGLGIRFVGKTAALKISEKLKDIDHLISFLKTGE
DLEIDTIGSVIQNSLINYFNNDEVLNMINELKTLNVNFKYIGNDEVSANPDNFFYNKKVV
ITGTLKNYNRRELTDLLNSQGAKVSSAVSSKTDYLIYGEEPGSKFEKANSLGIQLISEKR
LDEIIQEN
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgaataatagtgattacgaaaattatataaaattaaaagatcaattaaacatttatcgg
cggcaatattacacagaagatgcaccgacagttcaagattttgaatatgatcgcctatat
caggaacttcttaaagttgaatctgcccatcctgaatgggtcaccaacgattctcccagt
caaaatgttggcggagcgataaattctgcttttccaaaatttaggcatgaaattccaatg
ttatcaatggatgatgttttttctttagaagagtctcaagcttcagctgaacgaattaag
aaatttgtaaatcaaactgatgttgaatttaatctggaacttaaaattgatggacttgca
ttatctcttatttatgaaaacgggagattagtaaaaggatcgactcgcggtgatggtttt
gtcggagaagacattactccaaatatatttcaaatcgacgatgttccgaaaaccattcct
ttaaaagaaagaatcgaagttagaggagaatgctatctaggaaaagacagttttgctgaa
ctcaacaataaaagattagaagacggcaagagtacatttgctaatccgcgtaatgctgca
gcgggaagtttacggcaattggattctagtattactaagtctcgtcatttacaaactttt
atttattttgtgattgaaccagaaaattatggtttaaaaacgcaaagcgaagctcttaag
caattacaagagtggggatttgctactaataatcaaaatcgagtcgttaatgattttaag
gaagttcaaaattatattgatgaatatcaagaaaaaagattagatttaccatacaatatt
gacggaattgtatttaaagttaatgattttaagcttcaatcccttttaggcaatactgta
aaagtaccgcgctgggagtttgcttacaaatttccaccaattgaagcgcacacccatctt
cgaacaattgaatggactgttggtcgaacaggagtagttactccaacggctgtaatggat
ccagtagctgtggccggtactacggttcgccgagcatctttacataattttgattttatg
aaggaaaaagatatccagcttaatgatgatgtttatatttataaggcaggggatatcatt
ccagaagttgatcgggttgatttaaaggctcgtaaagaaaaaatcaactaccaagagcca
agctattgtccagattgtggttctaaattagttcatttagaagaagaagttgctttaaga
tgtattaacccgatgtgtccagcgcaagttcgggcccacattgaacactttgcatcaaga
gatgcgatgaatatcttaggcctcggtcctaaagtagttgaaaaattatatgatttagga
ttagttgcaacaattcctgatttatataaattagatgaagccaaacttcatcaggtttct
ggatttcaagaaaaatcagttataaaactattagataatattaatgctagtaaaagccgc
tccttagaaaaaattttatatggattaggaattagatttgttggaaaaacagcagcatta
aaaatttcagaaaaattaaaagatatcgatcatttaatttcatttttaaaaactggcgaa
gatttagaaattgataccatcggttccgtaattcaaaattcccttattaattattttaat
aacgatgaagttttgaacatgatcaatgaattaaaaactttaaatgttaattttaaatat
attggaaacgatgaagtttcagcaaaccctgataatttcttttataataaaaaagtagtg
ataactggaactttaaaaaattataatagaagagaattaaccgatttattaaattctcag
ggagcgaaagtgagcagtgcagtatcatcaaaaactgattatttaatttatggtgaagaa
ccaggatcaaaatttgaaaaggcaaattctttaggaatacagttaatatcggaaaaaagg
ttagatgaaatcatacaagaaaattaa
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