Xanthomonas albilineans: XALC_1729
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Entry
XALC_1729 CDS
T01160
Symbol
ligA
Name
(GenBank) putative nad-dependent_dna_ligase protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xal
Xanthomonas albilineans
Pathway
xal03030
DNA replication
xal03410
Base excision repair
xal03420
Nucleotide excision repair
xal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XALC_1729 (ligA)
03410 Base excision repair
XALC_1729 (ligA)
03420 Nucleotide excision repair
XALC_1729 (ligA)
03430 Mismatch repair
XALC_1729 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xal03032
]
XALC_1729 (ligA)
03400 DNA repair and recombination proteins [BR:
xal03400
]
XALC_1729 (ligA)
Enzymes [BR:
xal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
XALC_1729 (ligA)
DNA replication proteins [BR:
xal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XALC_1729 (ligA)
DNA repair and recombination proteins [BR:
xal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
XALC_1729 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XALC_1729 (ligA)
MMR (mismatch excision repair)
DNA ligase
XALC_1729 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XALC_1729 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Bep_C_terminal
DUF7642
HHH
Motif
Other DBs
NCBI-ProteinID:
CBA16225
UniProt:
D2UDW8
LinkDB
All DBs
Position
complement(2037731..2040247)
Genome browser
AA seq
838 aa
AA seq
DB search
MIAKFTPQQRVVELRSQLEDANHRYYVLADPAIPDAEYDALMRELEALESAHPALAREDS
PTRSVGARPDSGFPEVRHAIPMLSLANAFETPSVAEDADDRIRFAEVADFERRIERELEL
AAPVFSVEPKLDGLAISLRYEDGVFVQGATRGDGSTGEDVTANLRQVRSVPLRLRELGMP
MPAVLEVRGEIYMPRAAFAAWNARALERNEKLLANPRNGAAGSLRQLDPAVTRRRPLAFF
AYSVGEVRGLELPETHSQTLQLLRRYGFPVAPEADTATGFDGLIAYFRRIGARRDALPYD
IDGVVYKLDDYDQQTAMGFVARAPRWALAHKFPAQEQSTVLRAIEVQIGRTGAATPVARL
EPVQVAGVIVTNATLHNADQIARLDVRVGDTVIVRRAGDVIPEVVRVIEARRPPGTLPWT
MPAVCPVCGSELVKEDDAVTWRCSGGLACAAQRKEAVRHFASRRALDIEGLGERQADALV
EFGFVQSLADLYALRVEDLVRMKAALDAASSADLLQAVEESKGALVLDAAGYAALAQQVP
GWRHADFLRRHLAVDLGGKLATKWAENLLAGIDASRATTLSRFLFALGIPHLGETTAKAL
AHWLGSLAFVRSTPAVLLQALPDIGGEVARAIATFFEQPGNAAVVDALIAAGIGFADESC
PPAALRERLDLAHLLSTLPVDKLGGKSAQRLAATYGTLDALLRANESGWTGAGLSAAGAA
NLVAYLADPAQRQGLLDAEAAMQRLLDAAPQQPTRHGGPLDGQTAVLTGSLTQLTRDAAK
ARLEALGAKVAGSVSKKTSFVVAGSEAGSKLDKAQELGVVVWDERQLLTFLAEHEGQG
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgatcgccaagttcactcctcagcaacgcgtcgtcgaactgcgcagtcagctggaggat
gccaatcaccgctactacgtccttgccgatccggccattcccgatgccgagtacgacgcg
ctgatgcgcgagctggaggcgctggagtccgcgcatcctgcgttggcgcgcgaagattcg
ccgacccgcagcgtcggtgcgcgaccggacagcggcttccctgaagtgcgccacgcgatt
ccgatgctgtcgctggccaatgcgttcgaaactcccagtgtggccgaggatgctgacgac
cgcatccgttttgccgaagtcgccgactttgagcgccgcatcgagcgcgaactggaattg
gccgcaccggttttttcggtcgaaccgaagctggacggtctggcgatcagcctgcgctac
gaggatggcgtgttcgtgcagggcgccacccgcggcgacggtagcaccggcgaggacgtc
accgcgaacctgcgtcaggtgcgctcggtcccgctgaggttgcgcgagctcggcatgccg
atgccggcggtgctggaagtgcgcggggaaatctacatgccgcgcgccgcgttcgctgcg
tggaacgcgcgcgcgctggagcgcaacgaaaaattgctggccaacccgcgcaacggcgcc
gctggttcgttgcgccaactcgatccagcggtgacccggcgccgaccgctggcgttcttc
gcctattcggtgggcgaagtgcgtggtctggaactgcccgaaacccattcgcagaccttg
cagttactacgccgttatgggttcccggtggcgccggaggccgataccgcgaccggcttc
gatggcctgattgcctattttcgccgcatcggtgcgcggcgcgatgccttgccctacgac
atcgacggagtggtttacaaactcgacgactacgaccagcaaacggcgatgggcttcgtc
gcgcgcgcgccgcgctgggcgctggcgcacaagttcccggcgcaagagcaatccactgtg
ctgcgtgcgatcgaggtgcagatcggtcgcacgggcgccgccaccccggtcgcacgcctg
gagccggtgcaggtcgccggggtcatcgtcaccaatgcgaccttgcacaatgccgaccag
atcgcgcggctggacgtgcgcgtcggcgacaccgtgatcgtgcgccgcgccggcgatgtg
attcccgaagtggtgcgggtgatcgaagcgcgtcgcccgcctggcacgctcccgtggacc
atgccggcggtgtgtccggtgtgcggttccgagctggtcaaggaagacgatgcggtgacc
tggcgttgcagcggtggcttggcgtgcgcggcgcagcgcaaggaagcggtacgtcatttc
gcctcgcgtcgtgcactggacattgaaggcctgggcgagcgccaagccgacgccttggtc
gaattcggcttcgtgcaatcgctggccgacctgtacgcgttgcgggtggaagatttggtg
cggatgaaggcagcgctggatgctgccagtagcgctgatctgctgcaggcagtggaggag
agcaagggcgccctggtgctcgatgccgccggttacgccgcgttggcgcagcaggtgccg
ggatggcggcatgccgatttcctgcgtaggcatttggcggtggatttgggtggcaagttg
gcgacgaagtgggcggagaatttgctcgccggcatcgatgccagtcgtgccactacgttg
tcgcgttttctgttcgcgctaggcatcccgcacttgggcgaaaccacggccaaggcgctg
gctcactggttgggatcgctggcattcgtgcgcagcaccccggcggtgctgctgcaagcg
ctgccggacatcggcggcgaggttgcgcgtgcgatcgccacgttcttcgaacagcccggc
aacgccgctgtggtcgatgctttgatcgcagccggaatcggctttgccgacgaaagctgt
ccgcccgcagcactgcgcgaacgcctggatctggcgcatctgctcagcacactgccggtg
gacaagcttggcggcaagagtgcgcagcgtttggcggccacgtatggcacgctggatgca
ctgcttcgcgccaacgaaagcggctggaccggcgcgggactgtcggcggcgggcgcggcc
aatctggtcgcctatctggccgatcctgcgcagcggcaagggttgctggatgcggaggcc
gcgatgcagcgcttgctcgacgccgcgccgcaacaacccacacgccacggcggtccgctg
gacgggcagaccgccgtgctcaccggcagcctgacgcaactcacccgcgatgcggcaaaa
gcgcggctggaagccttgggggccaaggtcgccggcagtgtgtcgaagaagaccagcttc
gtcgtcgccggcagcgaggccggttccaagttggacaaggcgcaggaactgggcgtggtg
gtctgggacgagaggcagctgctgacgttcctggccgaacacgaggggcaggggtga
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integrated database retrieval system
