Xanthomonas euvesicatoria pv. citrumelo F1: XACM_1599
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Entry
XACM_1599 CDS
T01616
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xax
Xanthomonas euvesicatoria pv. citrumelo F1
Pathway
xax03030
DNA replication
xax03410
Base excision repair
xax03420
Nucleotide excision repair
xax03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XACM_1599 (ligA)
03410 Base excision repair
XACM_1599 (ligA)
03420 Nucleotide excision repair
XACM_1599 (ligA)
03430 Mismatch repair
XACM_1599 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xax03032
]
XACM_1599 (ligA)
03400 DNA repair and recombination proteins [BR:
xax03400
]
XACM_1599 (ligA)
Enzymes [BR:
xax01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
XACM_1599 (ligA)
DNA replication proteins [BR:
xax03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XACM_1599 (ligA)
DNA repair and recombination proteins [BR:
xax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
XACM_1599 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XACM_1599 (ligA)
MMR (mismatch excision repair)
DNA ligase
XACM_1599 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XACM_1599 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AEO41880
LinkDB
All DBs
Position
1792200..1794701
Genome browser
AA seq
833 aa
AA seq
DB search
MTASPDPAQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADS
PTQRVGHLAASRFAEVRHALPMLSLGNAFSEEEVTEFVRRISERLEVKQPLFSAEPKLDG
LAISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRGEVYMPR
AAFEAYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQT
HSAILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLDDLAGQR
AMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATL
HNADQIARLDVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSQIVRE
EGQAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVKGVADLYLLS
VDQLLQLRLISTAESPHAFLREAREHLASGAYAQLETSVVGIGVDLAGERDVPQTWQADL
LRAGLPRFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKALSAWFG
DLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAIDDLLQRGVRIGDTHPPSPKL
REALSFASVLEDMDIPKVTPVRAQQLAAAVDSFAALRTAGADALQQAGVPAPVVAALLQW
LDRPENTALANAAQQAMETVLARLPQADALQAGPLDGQTVVITGTLAALTRDAAKQRLEA
LGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGDHGQQP
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgactgccagcccggatcccgctcagcgcatcgatgccctgcgccgtcgcatcgaagac
gccaactaccggtatcacgtgctcgacgagccgcagatggccgacgccgattacgacaag
ttgatgcgcgagctggaggccttggagcgcgcgcacccggaattggccagtgccgattcg
ccaacccagcgcgtcggccatctggccgcctcgcggtttgccgaagtgcggcatgccttg
ccgatgctgtcgttgggcaatgcgttcagcgaggaggaagtgaccgagttcgtgcgccgc
atcagcgagcggctggaggtcaagcaaccgctgttttcggccgaacccaaactcgatggc
ctggcaatcagcctgcgctacgagaatggcgagttcgtgcagggcgccacgcgcggcgat
ggcgccaccggcgaggatgtcagcgccaacctgcgcaccgtcaaggcgattccattgcgg
ctgcgcggcgagggctggccgcaggtgctggaagtgcgcggcgaggtctacatgccgcgc
gccgcgttcgaagcctacaacgcacagatgcgtgcgcagggcggcaaggtgctggccaac
ccgcgcaatggcgcggccggctcgctgcgccagctggatgcgcgcatcaccgcgcagcgc
ccgctgagcttctttgcctacggcgtcggcgaagtgagcgaaggcgcattgccgcagacc
cattcggcgatcctggcgcaactgcgtgcgtggggctttccggtcagcgcgctggtcgag
gtcgtgcagggcagcgatggtctgctggcgtattaccagcgcatcggtgccgcacgcgat
gggctggccttcgatatcgatggcgttgtgtacaagctcgacgatctggccgggcaacgc
gcaatgggcttcgtctcgcgcgcgccgcgttgggcgattgcgcacaagttccccgcacag
gagcagtccaccacggtggaggcgatcgagatccagatcggccgcaccggtgcggccacg
ccggtggcgcgcctgaagccggtgcatgtggccggggtgatcgtcaccaatgccacgctg
cacaacgccgaccagatcgcgcggctggatgtgcgcgtgggcgacacggtgatcgtgcgc
cgcgccggggatgtcattcctgaagtggccgctgtggtggccgaccagcgcccgcccggt
acccaggcctggcagatgccgacgcaatgcccggtgtgcggttcgcagatcgtgcgcgaa
gaaggtcaggcggtctggcgctgttccggcgagttgacctgcccggcgcagcgcaaggag
gcgttccggcattttgtctcgcggcgcgcgatggatgtggacggcctgggcgaaaaattc
atcgaagtgctggtcgacagtggcctggtgaaaggcgtggccgacctgtatctgctaagc
gtggatcagctgctgcaattgcgcctgatcagcacggccgagagtccgcacgcgttcttg
cgcgaggcgcgcgagcatctggccagcggcgcatatgcgcagctggaaaccagcgtggtc
ggcatcggcgtggacctggccggcgagcgcgacgtgccgcagacctggcaggccgacctg
ctgcgcgcaggcttgccgcgcttcgactggaaccgcaagaagatcgccaccaagtgggcg
gagaatctgatcgaggcgatcgaaacatcgcgcgacaccacgctggagcgtttcctgttt
gcgctgggtatcgagcatgtgggcgaaagcacggccaaggcgttgtcggcctggttcggc
gacctggaattgatccggcatctgccgtggccgctgttcaagcgcgtgccggacatcggc
ggcgaagtggcgcgttcgcttgggcacttcttcgatcaggccggcaatcagcaggccatc
gatgacctgctgcagcgtggcgtgcgcatcggcgatacgcatccaccttcgcccaagctg
cgcgaggcgctgagttttgccagcgtgttggaagacatggacattcccaaggtgacgccg
gtgcgtgcgcagcagcttgccgcggcggtggattcgttcgctgcgttgcgcacggccggt
gccgatgccttgcagcaagccggcgttccggcacccgtggtggccgcgttgctgcaatgg
ctggatcgccccgaaaacactgcgctcgcgaatgcggcgcagcaggcgatggaaaccgtg
ctggcgcgtctgccccaagccgatgcgctgcaggccggcccgctcgatggccagaccgtg
gtcatcaccgggaccctggctgcgctgacgcgcgatgcggccaagcagcggctcgaagca
ttgggcgccaaggtcgccggtagcgtctccaagaagacggcatttctggtggccggcgaa
gaagccggttccaagctcgacaaggcgcagtcgctgggcgtggagatctgggacgaagcg
cgtctgctggccttcctgggcgaccacggccaacagccatga
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