Xanthomonas sp. CPBF 426: XSP_001657
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Entry
XSP_001657 CDS
T10769
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xaz Xanthomonas sp. CPBF 426
Pathway
xaz03030
DNA replication
xaz03410
Base excision repair
xaz03420
Nucleotide excision repair
xaz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XSP_001657 (ligA)
03410 Base excision repair
XSP_001657 (ligA)
03420 Nucleotide excision repair
XSP_001657 (ligA)
03430 Mismatch repair
XSP_001657 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xaz03032
]
XSP_001657 (ligA)
03400 DNA repair and recombination proteins [BR:
xaz03400
]
XSP_001657 (ligA)
Enzymes [BR:
xaz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
XSP_001657 (ligA)
DNA replication proteins [BR:
xaz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XSP_001657 (ligA)
DNA repair and recombination proteins [BR:
xaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
XSP_001657 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XSP_001657 (ligA)
MMR (mismatch excision repair)
DNA ligase
XSP_001657 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XSP_001657 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
CAD1790535
LinkDB
All DBs
Position
1:1917970..1920471
Genome browser
AA seq
833 aa
AA seq
DB search
MTVSPDPAQRIDALRHRIEDANYRYHVLDEPQMADVDYDRLMRELEALEAAHPELASADS
PTQRVGHLAASRFAEVRHALPMLSLGNAFSDEEVTEFVRRISERLEVKQPLFSAEPKLDG
LAISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGAGWPQVLEVRGEVYMPR
AAFETYNAQMRLHGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQT
HSAILAQLRTWGFPVSALVEVVQGSDGLLAYYQRIGEARDGLPFDIDGVVYKLDDLAGQR
EMGFVARAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATL
HNADQIARLDVRVGDTVIVRRAGDVIPEVAGVVAEQRPPGTQPWQMPTQCPVCGSEIVRE
EGEAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGVVQGVADLYLLT
VDQLLQLRLISTAESPHAFLREAREHLASGAYGQLETTVVGIGVDLAGEREVPHTWQADL
LRAGLPAFDWNRKKIATKWAENLIAAIAQSRDTTLERFLFALGIEHVGESTAKALSAWFG
DLELIRHLPWPLFKRVPDIGGEVARSLGHFLDQPGNQQAIDDLLQRGVRIGDAHPPSPKL
REALSFASVLEDMDIPKVTPVRAQQLAAAVASFDALRSAGSDALLQAGVPAPVVASLLQW
LERPENAALASAAQQAMETVLSRLPAADALQTGPLDGQTVVITGTLAALTRDAAKQRLEA
LGAKVAGSVSKKTAFLVSGEEAGSKLDKAQSLGVEIWDEARLLAFLGEHGQQP
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcagcccggaccccgcgcagcgtatcgacgccctgcgtcatcgtatcgaggac
gccaactaccgctatcacgtgctcgacgagccgcagatggccgacgtcgactacgaccgc
ctgatgcgtgaacttgaggcattggaggcagcgcatccggagctggccagcgccgattcg
ccgacccagcgcgttggccacctggccgcctcgcgctttgccgaagtgcggcatgccctg
ccgatgctgtcgttgggcaatgccttcagcgacgaggaagtgaccgagttcgtgcggcgc
atcagcgagcgcctggaggtgaaacagccgctgttctcggccgagcccaagctcgatggc
ctggcgatcagcctgcgctacgaaaacggcgagttcgtgcagggcgcaacgcgcggcgac
ggcgccaccggcgaggatgtcagcgccaatctgcgcaccgtcaaggcgattccgctgcgc
ctgcgtggcgcaggctggccgcaggtactggaggtgcgcggcgaggtgtacatgccgcgc
gccgccttcgagacctacaacgcgcagatgcgcctgcacggtggcaaggtgctggccaat
ccgcgcaatggcgccgccggttcgctgcgccagctggatgcgcgcatcacggcgcagcgc
ccgctgagtttctttgcctacggcgtgggcgaagtgagcgaaggtgcgttgccgcagacg
cattcggcaatcctggcgcagttgcgcacgtggggttttccggtgagcgccctggtcgag
gtggtgcagggcagcgacggcctgttggcgtactaccagcgcatcggtgaagcgcgcgat
ggcttgcccttcgacatcgatggcgtggtgtacaagctcgacgatctggccggccagcgc
gagatgggctttgtcgcgcgcgcgccacgctgggcgatcgcgcacaagttcccggcgcag
gagcagtccaccacggtggaggcaatcgagatccagatcggccgcaccggtgcggccacg
ccggtggcgcggctgaagccggtgcacgtggccggggtgatcgtgaccaatgccaccttg
cacaacgccgaccagatcgcgcggctggatgtgcgcgtgggcgataccgtgatcgtgcgg
cgtgccggcgatgtgattccggaggtggccggcgtggtcgccgagcaacggccacccggc
acccagccatggcagatgcccacgcaatgcccggtgtgcgggtcggagatcgtgcgcgag
gagggcgaggcggtgtggcgctgctccggcgagctgacctgcccggcgcagcgcaaggaa
gcgttccggcatttcgtctcgcgccgcgcgatggatgtcgatggcctgggcgagaaattc
atcgaggtgctggtcgatagcggtgtagtgcagggcgtggccgacctgtatctgctcacc
gtggaccagctgctgcaactgcgcctgatcagtactgccgagagcccgcatgcgttcctg
cgcgaggcgcgcgagcatctggccagcggtgcgtatggccagctggaaaccaccgtggtc
ggcatcggtgtggacctggccggcgagcgcgaggtgccgcacacctggcaggccgatctg
ttgcgcgccgggctgccggcgttcgactggaatcgcaagaagatcgccaccaagtgggcg
gaaaacctgattgcggcgatcgcgcaatcgcgcgataccacgttggagcgtttcctgttc
gcgctgggtatcgagcatgtcggcgaaagcaccgccaaggccttgtcggcgtggttcggc
gatctggaactgatccgccatctgccgtggccgctgttcaagcgcgtgccggacatcggt
ggcgaggtggcgcgttcgctcgggcacttcctcgaccagcccggcaatcagcaggccatc
gacgacctgctgcagcgtggcgtgcgcatcggcgatgcgcatccgccatcgcccaagctg
cgcgaggcgctgagctttgccagcgtgctggaagacatggacatccccaaggtgacgccg
gtgcgtgcgcagcagctggctgccgcggtggcctcgttcgatgcgctgcgcagcgccggg
tccgatgccttgctgcaggccggcgttcccgcgccggtggtggcgtcgttgctgcaatgg
ctggagcggccggaaaatgcggccctggccagcgccgcgcaacaggcgatggaaacggtg
ctgtcgcgtctgcccgcagccgatgcgctgcaaacgggcccgctcgatggccagaccgtg
gtgatcaccggcaccctggctgcgctcacccgcgatgcggccaagcaacggctggaggcg
ctgggcgccaaggtcgccggcagcgtctccaagaaaaccgcgtttctggtgtccggcgaa
gaggccgggtccaagctcgacaaggcgcagtcgctgggtgtggagatctgggatgaggcg
cgcttgctggccttccttggcgagcacggccagcagccatga
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