Xenorhabdus bovienii SS-2004: XBJ1_0906
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Entry
XBJ1_0906 CDS
T01186
Symbol
ybjF
Name
(GenBank) putative tRNA (uracil-5-)-methyltransferase with S-adenosyl-L-methionine-dependent methyltransferase domain
KO
K03212
23S rRNA (uracil747-C5)-methyltransferase [EC:
2.1.1.189
]
Organism
xbo
Xenorhabdus bovienii SS-2004
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xbo03009
]
XBJ1_0906 (ybjF)
Enzymes [BR:
xbo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.189 23S rRNA (uracil747-C5)-methyltransferase
XBJ1_0906 (ybjF)
Ribosome biogenesis [BR:
xbo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
XBJ1_0906 (ybjF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
Methyltransf_15
Cons_hypoth95
Methyltransf_12
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
CBJ80047
UniProt:
D3UZL8
LinkDB
All DBs
Position
complement(915529..916662)
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AA seq
377 aa
AA seq
DB search
MQCAQYTAGHCHSCQWLNKSYSQQLSDKQQHLQQLLRETSATYWLPPVSSLISGFRNKAK
MVVSGSVERPQLGMLHRDGRTVDLCDCPLYPQYFQLVFESIKIFIAKAGLVPYNVARKKG
ELKYILLTESRASGEMMLRFVLRSETKLAQLEHALPWLQEQLPQLTVISANIQPTHMAIL
EGEKEVIFTEHKMLKEIFNGIPLYIRPRSFFQTNPEIASALYATAGRWVRELNISSMWDL
FCGAGGFGLHCADKETRLTGIEISAEAIACAKNSAKSLGLEQVEFQALDSTHFALDKAQL
PELVLVNPPRRGIGKALCEYLSRMAPKFILYSSCNAETMAKDIAALEQYRIEKVQLFDMF
PHTEHYETLALLIFDGK
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgcaatgtgcgcagtataccgcggggcattgtcactcctgccagtggctcaataagtcc
tattcacaacaattatctgataaacaacaacatttacagcagcttttacgggagacgtca
gcaacgtactggctgcctccagtcagcagcctgatcagtggatttcgtaataaggccaag
atggtggtaagtggcagtgttgaacgcccacagcttggcatgcttcaccgtgatggcaga
acggtggatctttgtgattgtcctttgtatccacaatattttcagctggtatttgaatcg
ataaaaatatttatcgctaaagctgggttggttccgtataacgttgcacgtaaaaaaggg
gaattgaaatatattctgctgacagaaagccgtgccagcggtgaaatgatgctgcgtttt
gtcctgcgctcagaaacaaaactggctcagttggaacatgctttgccgtggttacaggaa
caactaccacaattgacggttatttctgccaatattcaaccgactcatatggcgattttg
gaaggggaaaaagaagtcatttttactgagcataagatgctgaaggaaatcttcaacgga
attccgctgtatattcgtccccgtagttttttccagacaaatccagaaattgcttcggcg
ctttatgcgacggctggtcgttgggtcagagagctgaatatcagcagcatgtgggatctc
ttttgtggagcaggaggttttgggctgcactgtgcagacaaagaaaccagactgacaggg
attgagattagtgcagaggccattgcctgtgccaaaaactcggccaaaagtcttggtctt
gagcaggttgaatttcaggcattggattctacacattttgcccttgataaagcgcaactc
cctgaactggtgctggtgaatcctcctcgcaggggaattggtaaggcgttatgcgaatac
ctcagtcggatggcacctaaatttattctctattcaagttgtaatgctgaaacaatggca
aaagatattgctgcgcttgagcaatatcgaatagaaaaagtgcaattattcgatatgttc
ccccatacagaacattatgaaacgctggcgttactgatctttgatggaaagtaa
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