Xenorhabdus bovienii SS-2004: XBJ1_3119
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Entry
XBJ1_3119 CDS
T01186
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xbo
Xenorhabdus bovienii SS-2004
Pathway
xbo03030
DNA replication
xbo03410
Base excision repair
xbo03420
Nucleotide excision repair
xbo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XBJ1_3119 (ligA)
03410 Base excision repair
XBJ1_3119 (ligA)
03420 Nucleotide excision repair
XBJ1_3119 (ligA)
03430 Mismatch repair
XBJ1_3119 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xbo03032
]
XBJ1_3119 (ligA)
03400 DNA repair and recombination proteins [BR:
xbo03400
]
XBJ1_3119 (ligA)
Enzymes [BR:
xbo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
XBJ1_3119 (ligA)
DNA replication proteins [BR:
xbo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XBJ1_3119 (ligA)
DNA repair and recombination proteins [BR:
xbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
XBJ1_3119 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XBJ1_3119 (ligA)
MMR (mismatch excision repair)
DNA ligase
XBJ1_3119 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XBJ1_3119 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CBJ82241
UniProt:
D3V3L2
LinkDB
All DBs
Position
complement(3065618..3067636)
Genome browser
AA seq
672 aa
AA seq
DB search
MESIIEKINKLRATLRHHEYLYHVMDAPEIPDAEYDRLLRELKVLEEQHPELITADSPTQ
RVGAAPLTAFGQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKDSRDLVFCCELKLDGLA
VSLLYEDGELVQAATRGDGTTGENITVNVRTIHAIPLRLKGNNIPARVEIRGEVFMKQGG
FEKLNDEARRKGNKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGVLEGGELPASHY
ERLMQFKQWGLPVSDNVKLCQGTQQVIDFYHNIEQQRPILGFDIDGIVIKVDSLELQETL
GFVAKAPRWATAFKFAAQEQMTIVRDVEFQVGRTGAITPVARLKPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVVIRRAGDVIPKVVGVVQDKRPAESQEVIFPEYCPVCRSDIERVEG
ESVARCTGGLFCGAQRKEALKHFVSRRAMDVDGMGEKIIEQLVDKEYVKTPADLFRLSAG
KLTGLERMGPKSAQNTIDALEKSKKTTFARFIYSLGIREVGEATAANLVAHFVTLEKLRA
ADTEALIAVQDVGGVVASHVVNFFNEPHNQTVIDDLIDNIGIYWESVETLQSDTVGNSFA
GKTVVLTGSLNRLSRDEAKDKLTALGAKVTGSVSKKTDLVIAGEAAGSKLAKATELGIEV
IDEEEMLRLLGE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtattatcgaaaaaatcaacaaactaagagcaacattgcgtcatcacgagtat
ttgtatcatgttatggatgcgccagagatccctgatgcagaatatgatcgcttactgcga
gaattaaaagtactggaagagcagcatccagagttgattacggctgattctccaacccag
cgtgttggtgcggcaccattaacggcatttggtcaggttcgtcatgagatcccgatgctg
tctttggacaatgtttttgatgaagaaagttatctggcatttgacaagcgtgttcgtgat
cgtctgaaagatagtcgggatttggtgttttgctgtgaattgaaactcgatggactggcg
gttagcttgctgtacgaagatggtgagttggtacaggctgcgactcgtggtgatggtacg
acaggggaaaatatcactgttaatgttcgtactattcatgctatccccctgcgcctgaag
gggaataatattccagcccgtgttgaaattcgtggtgaagtttttatgaagcagggtggg
tttgaaaaactcaatgacgaagcgcgtcgtaagggtaacaaagttttcgctaatccacgt
aatgcggcagcaggatcactgcgccagcttgatccgcgtattacggccaaacggccattg
accttttattgctatggcgtcggtgttctggaaggtggagaattaccggcgagccattac
gaacgtctgatgcagttcaaacaatggggtttgccagtcagtgacaacgtgaaattatgc
cagggaactcagcaagtcatcgacttctaccataacattgaacagcagcgcccgatattg
ggttttgatattgatggcattgttatcaaagttgactcccttgaattacaggaaacgttg
ggttttgttgccaaagcgccccgttgggcaacggctttcaagtttgctgctcaggaacag
atgaccatcgtgcgtgacgttgaatttcaagtgggacgtactggcgctatcacacccgtt
gcacgtttgaagccggtgcaagttgcaggggtaatagtcagtaatgccacactacacaat
gcggatgaaattgaacgtttggggctgcgtattggggataccgtggttattcgtcgtgcg
ggtgacgtgatcccaaaagttgttggtgttgtacaggataaaaggccagccgaaagtcag
gaagtgatttttcctgaatactgcccagtttgtcgctcggatattgagcgagtcgaaggg
gaatccgtggcgcgctgtactggtggattgttttgcggtgcgcagcgtaaagaagcgctc
aaacatttcgtttcccgtcgagccatggatgtcgatggtatgggagaaaagatcattgag
cagcttgtcgataaagaatatgttaaaacacctgccgatcttttccgtctgagcgctgga
aaattaacgggtcttgagcgaatgggacctaaatctgctcagaatacgattgatgccttg
gaaaaatccaagaaaaccacattcgctcgttttatctactctctgggaattcgtgaagtc
ggggaggcgactgcagctaatttggttgcacattttgtcacattagaaaaactgcgggca
gcagatactgaagcgttaatcgcggtgcaggatgtgggaggtgtagttgctagccatgtc
gtgaatttctttaatgaaccgcataatcagactgtgattgatgacctcattgacaatatc
ggaatttactgggaatcagttgaaacgttgcagtcagacacagttggtaactcatttgct
ggcaagactgtggttttgacaggctcgctaaaccgtttatcccgggatgaggccaaagat
aagctgacagcgctgggcgcgaaagtgacaggcagtgtttccaagaaaacggatttagtc
attgctggcgaagctgcgggttctaaattagccaaagccacggaattaggaatagaagtc
attgatgaagaagaaatgcttcgtctgttaggtgaataa
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