Xenorhabdus budapestensis: HGO23_07180
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Entry
HGO23_07180 CDS
T07176
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xbu
Xenorhabdus budapestensis
Pathway
xbu03030
DNA replication
xbu03410
Base excision repair
xbu03420
Nucleotide excision repair
xbu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xbu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HGO23_07180 (ligA)
03410 Base excision repair
HGO23_07180 (ligA)
03420 Nucleotide excision repair
HGO23_07180 (ligA)
03430 Mismatch repair
HGO23_07180 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xbu03032
]
HGO23_07180 (ligA)
03400 DNA repair and recombination proteins [BR:
xbu03400
]
HGO23_07180 (ligA)
Enzymes [BR:
xbu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HGO23_07180 (ligA)
DNA replication proteins [BR:
xbu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HGO23_07180 (ligA)
DNA repair and recombination proteins [BR:
xbu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HGO23_07180 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HGO23_07180 (ligA)
MMR (mismatch excision repair)
DNA ligase
HGO23_07180 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HGO23_07180 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
RNA_ligase
5_3_exonuc
HHH
DUF4796_N
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
QTL41103
LinkDB
All DBs
Position
1521145..1523163
Genome browser
AA seq
672 aa
AA seq
DB search
MKNIIQTINELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELKSLEEQHPELITADSPTQ
RVGAAPLTAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKDSRELVFCCEFKLDGVA
VSLLYENGELVQAATRGDGTTGENITANIRTIRAIPLRLKGDNIPVRVEIRGEVFMKQTG
FEKLNEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGIGVIDGGELPASHY
ERLMQFKQWGLPVSDKVKLCQGTQQVLDFYHEVEQQRPTLGFDIDGVVIKVDSLELQETL
GFVARAPRWATAFKFPAQEQITIVRDVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVIIRRAGDVIPQVVGVVKEQRPTESQEVTFPQHCPVCGSDIERIEG
EAVARCTGGLFCGAQRKEALRHFVSRRAMDVDGMGEKIIEQLVDKEYVKTPADLFRLTAG
QLIGLERMGPKSAQNVVNALEKSKKTTFARFIYSLGIREVGEATAANLVAHFGTLEKLRA
ADTEALIAVQDVGGVVASHVVNFFNEPHNQTVIDDLVNNIGICWEAAEIPQPEEIDSPFA
GKTVVLTGSLNLLSRDEAKDKLVALGAKVTGSVSKKTDLVIAGEAAGSKLAKAAELGITV
IDEEKMLRLLGE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatattattcaaacaatcaacgaactaagaacaacattgcgtcatcatgagtat
ttgtatcatgttatggatgcgccagagatccctgatgtggaatacgatcgcttaatgcgt
gagttgaaatcactggaagaacagcatccagagttgattacggcagattctcctacccaa
cgggttggagcagcgccattaactgcatttgagcaggttcgtcacgaaattccgatgtta
tctctggataatgtattcgatgaagaaagttatctggcatttgataaacgtgttcgtgat
cgtctgaaagacagtcgcgaattggtattctgttgtgaatttaaactcgatggtgtggct
gtcagcctgttgtatgaaaatggcgaattagtacaggctgcgactcgtggggatggtacg
acaggagaaaatattaccgccaatattcgtacaattcgcgcgattcctctgcgtttgaaa
ggagacaacattcctgttcgtgttgagattcgtggtgaagtctttatgaagcaaacgggt
tttgaaaaactcaatgaagaagcgcgccgtacaggtaataaagtatttgctaaccctcgc
aatgcagccgcaggatcactgcgccagctcgacccacgtattacagccaagcgtccgctg
actttttattgttatggcattggtgtgattgacggtggagagttgccagcaagccactac
gagcggctgatgcaattcaaacaatgggggctgccggttagcgataaagtgaaattgtgt
cagggaacccaacaagtattggatttttaccacgaggtagagcaacagcgcccgactctg
ggtttcgacattgatggtgttgtcattaaagtggactcccttgaattacaggaaacattg
gggtttgtagccagagctccacgttgggcaaccgcatttaagtttcctgcacaagaacag
ataacaatcgtacgtgatgtcgagtttcaggtaggacgcacaggggcaattacaccagtt
gcacgtctggaaccagtacaggttgcaggtgtgatagtcagtaacgctacattacacaat
gcggatgaaattgaacgactggggctgcgtataggagataccgtcattattcgccgggca
ggtgatgtgattccgcaagttgttggtgtggtaaaggagcaaagaccaacagaaagccag
gaagtgactttcccacagcattgtcctgtttgtggttctgatatcgaacgtattgaaggc
gaggctgtagcgcgttgtacaggtggcttattttgtggggcacaacgtaaagaagcgctc
agacactttgtttcccgtcgtgcaatggatgtggatggaatgggagagaaaattattgaa
cagttggttgataaggaatatgtcaaaacaccagccgatcttttccgtttgaccgcaggg
caattaatcggccttgagcgaatggggccaaaatccgctcagaatgtggttaatgctctg
gaaaaatccaagaaaaccacatttgcccgtttcatctattctttaggcattcgggaagtt
ggagaagccactgcggctaatttagttgcacattttggcacattggaaaaattgcgtgca
gcagatacggaagcattaattgctgtacaagatgtaggtggtgtggttgccagccatgta
gttaatttctttaacgaaccgcataaccagacagtaattgatgatcttgtcaataatatt
ggcatctgttgggaagcggcggaaataccgcaaccagaagaaatcgatagcccatttgcg
ggtaagaccgtagttttgactggctcattaaaccttttatcccgggatgaggccaaagac
aaattagttgcgttgggcgcgaaagtcacaggcagtgtctccaagaaaacagatttggtg
attgcgggtgaggctgcgggatctaaattagccaaagcggcagaattgggtataactgtg
attgatgaagaaaaaatgcttcgtcttttaggtgaataa
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integrated database retrieval system
