Xanthomonas campestris pv. campestris 8004: XC_2664
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Entry
XC_2664 CDS
T00247
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xcb
Xanthomonas campestris pv. campestris 8004
Pathway
xcb03030
DNA replication
xcb03410
Base excision repair
xcb03420
Nucleotide excision repair
xcb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XC_2664
03410 Base excision repair
XC_2664
03420 Nucleotide excision repair
XC_2664
03430 Mismatch repair
XC_2664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xcb03032
]
XC_2664
03400 DNA repair and recombination proteins [BR:
xcb03400
]
XC_2664
Enzymes [BR:
xcb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
XC_2664
DNA replication proteins [BR:
xcb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XC_2664
DNA repair and recombination proteins [BR:
xcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
XC_2664
NER (nucleotide excision repair)
GGR (global genome repair) factors
XC_2664
MMR (mismatch excision repair)
DNA ligase
XC_2664
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XC_2664
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AAY49713
UniProt:
Q4UTB0
LinkDB
All DBs
Position
complement(3207408..3209909)
Genome browser
AA seq
833 aa
AA seq
DB search
MTASPDPAQRIDALRQRIEDANYRYHVLDEPQIADVEYDRLLRELEALEAAHPELATADS
PTQRVGYLAASRFAEVRHVLPMLSLGNAFSDEEVAEFVRRISERLERKQPVFCAEPKLDG
LAISLRYEQGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGTGWPEVLEVRGEVYMPR
AAFEAYNAQMRLQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVADGALPPT
HSTMLAQLREWGFPVSQLVEVVQGSEGLLTYYRRIGEARDGLPFDIDGVVYKLDDLAGQR
EMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVVVTNATL
HNADQIARLDVRVGDTVIVRRAGDVIPEVAGVVAEQRPAGTHAWQMPTQCPVCGSEIVRE
EGQAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGVVQGVADLYLLN
VDQLLQLRLISTADSPHAFLREAREHLAAGAYAQVEQTMVGIGVDLAGVQPAPQTWQADL
LRAGLPAFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKALSAWFG
ELDVIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAIDDLLQRGVRIGDAHPPSPKL
RGALSFAVLLEDLDIPKVTPVRAQQLAAATASFDALIASEADPLLQAGVPAPVIASLQQW
LARPENAALATAAQRAMDALLAQLPQADAVQAGPLDGQTVVITGTLAALTRDAAKQRLES
LGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLSEHGQAV
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgactgccagcccggatcccgcacagcgcatcgatgccctgcgtcagcgcatcgaagac
gccaactaccgctatcacgtgctcgacgagccgcagatcgccgatgtcgagtacgaccgg
ctgctgcgcgagctggaggcactggaagcggcgcatccggagctggccactgccgattcg
ccgacccagcgcgtgggctacctggccgcgtcgcggtttgccgaagtgcggcatgtgttg
ccgatgttgtctctgggcaatgccttcagcgacgaggaagtggccgagttcgtgcgccgc
atcagcgaacggttggagcgcaagcagccggtcttttgcgccgaacccaagctcgacggc
ctggccatcagcctgcgctacgaacagggcgaattcgtgcagggcgccacccgcggcgat
ggcgccaccggcgaggatgtgagcgccaatctgcgcaccgtcaaggccattccgctgcgc
ctgcgtggcacgggctggcccgaggtgctggaggtgcgtggcgaggtctacatgccgcgt
gccgcgttcgaggcctacaacgcgcagatgcgcctgcagggcggcaaggtgctggctaat
ccgcgcaatggtgcggccggttcgttgcgccagctcgatgcacgcatcaccgcgcaacgg
ccgttgagtttttttgcctacggcgtgggcgaggtcgcggacggtgcgttgccgccgact
cactcgacgatgttggcgcagctgcgcgaatggggattcccggtcagccagctggtagag
gtggtgcagggcagcgagggcttgctgacgtactaccgacgcatcggtgaagcacgcgac
ggcctgccattcgatatcgatggcgtggtgtacaagctggacgatctggctggccagcgc
gagatgggctttgtctcgcgcgcaccgcgctgggcgctggcgcacaagttcccggcccag
gagcaatccaccacggtggaggcgatcgaaatccagatcggccgcaccggtgcggcaacg
ccggtggcacgtttgaagccggtgcacgtcgccggtgtggtggtgaccaacgcgaccttg
cacaacgccgatcagatcgcgcgcctggatgtgcgcgtgggcgacacggtgatcgtgcga
cgcgctggtgatgtgattccggaggtggccggtgtggtcgccgagcagcgccctgccggc
acccacgcttggcagatgccgacccaatgcccggtatgcggctcggagatcgtgcgcgaa
gaaggccaggcggtgtggcgctgttcgggcgagctcacgtgcccggcgcagcgcaaggaa
gccttccgccattttgtgtcgcggcgcgcgatggacgtggacgggctgggcgaaaaattc
attgaagtgctggtcgacagtggcgtggtgcagggtgtggccgacctgtatctgctcaat
gtcgaccagctgctgcagctgcgtttgatcagcaccgccgacagcccgcatgcgttcttg
cgtgaagcacgcgagcacctggctgccggtgcgtatgcgcaggtcgagcaaaccatggtc
ggcatcggtgtggatcttgccggcgtgcagccggcgccgcagacctggcaggccgatctg
ttgcgcgcgggcctgccggcattcgactggaatcgcaagaaaatcgccaccaagtgggcc
gaaaacctgatcgaggcgatcgagacctcgcgcgacaccacgctggagcgcttcctgttt
gcgctgggcatcgagcatgtgggcgagagcacggccaaggcgttgtcggcgtggtttggg
gagctggatgtgatccgtcatctgccctggccgctgttcaagcgcgtgccggacatcggc
ggtgaagtggcgcgctcgctcgggcatttcttcgaccaggccggcaaccagcaggcgatc
gatgacctgctgcagcgtggtgtgcgcatcggcgatgcgcatccgccgtcgcccaagctg
cgcggcgcgctgagttttgcggtgctgctcgaagacctggatattcccaaggtcaccccg
gtgcgtgcgcagcaactggccgctgcaaccgcctccttcgatgcgttgatcgcctccgag
gccgacccgttgctgcaagccggtgtgccggcacctgtgatcgcctcgctgcagcagtgg
ttggcgcgtccggaaaacgcggcactggcaacggccgcgcaacgcgccatggacgcgttg
ctggcgcaattgccgcaggccgatgcggtgcaggccgggccgctggacggccagaccgtg
gtcatcaccggcacgctggccgcgctgacgcgcgatgccgccaagcagcgcctggaatcg
ctgggcgccaaggtggccggtagcgtctccaagaaaaccgcattcctggtggcgggcgaa
gaagccggctccaagctggacaaggcgcagagcctgggcgtggagatctgggatgaagcg
cggctgctggcgttcctgagtgagcacggtcaagcggtatga
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