Xanthomonas campestris pv. campestris ATCC 33913: XCC1570
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Entry
XCC1570 CDS
T00083
Symbol
lig1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xcc
Xanthomonas campestris pv. campestris ATCC 33913
Pathway
xcc03030
DNA replication
xcc03410
Base excision repair
xcc03420
Nucleotide excision repair
xcc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XCC1570 (lig1)
03410 Base excision repair
XCC1570 (lig1)
03420 Nucleotide excision repair
XCC1570 (lig1)
03430 Mismatch repair
XCC1570 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xcc03032
]
XCC1570 (lig1)
03400 DNA repair and recombination proteins [BR:
xcc03400
]
XCC1570 (lig1)
Enzymes [BR:
xcc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
XCC1570 (lig1)
DNA replication proteins [BR:
xcc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XCC1570 (lig1)
DNA repair and recombination proteins [BR:
xcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
XCC1570 (lig1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XCC1570 (lig1)
MMR (mismatch excision repair)
DNA ligase
XCC1570 (lig1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XCC1570 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AAM40865
UniProt:
Q8PAB5
LinkDB
All DBs
Position
1832376..1834877
Genome browser
AA seq
833 aa
AA seq
DB search
MTASPDPAQRIDALRQRIEDANYRYHVLDEPQIADVEYDRLLRELEALEAAHPELATADS
PTQRVGYLAASRFAEVRHVLPMLSLGNAFSDEEVAEFVRRISERLERKQPVFCAEPKLDG
LAISLRYEQGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGTGWPEVLEVRGEVYMPR
AAFEAYNAQMRLQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVADGALPPT
HSTMLAQLREWGFPVSQLVEVVQGSEGLLTYYRRIGEARDGLPFDIDGVVYKLDDLAGQR
EMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVVVTNATL
HNADQIARLDVRVGDTVIVRRAGDVIPEVAGVVAEQRPAGTHAWQMPTQCPVCGSEIVRE
EGQAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGVVQGVADLYLLN
VDQLLQLRLISTADSPHAFLREAREHLAAGAYAQVEQTMVGIGVDLAGVQPAPQTWQADL
LRAGLPAFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKALSAWFG
ELDVIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAIDDLLQRGVRIGDAHPPSPKL
RGALSFAVLLEDLDIPKVTPVRAQQLAAATASFDALIASEADPLLQAGVPAPVIASLQQW
LARPENAALATAAQRAMDALLAQLPQADAVQAGPLDGQTVVITGTLAALTRDAAKQRLES
LGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLSEHGQAV
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgactgccagcccggatcccgcacagcgcatcgatgccctgcgtcagcgcatcgaagac
gccaactaccgctatcacgtgctcgacgagccgcagatcgccgatgtcgagtacgaccgg
ctgctgcgcgagctggaggcactggaagcggcgcatccggagctggccactgccgattcg
ccgacccagcgcgtgggctacctggccgcgtcgcggtttgccgaagtgcggcatgtgttg
ccgatgttgtctctgggcaatgccttcagcgacgaggaagtggccgagttcgtgcgccgc
atcagcgaacggttggagcgcaagcagccggtcttttgcgccgaacccaagctcgacggc
ctggccatcagcctgcgctacgaacagggcgaattcgtgcagggcgccacccgcggcgat
ggcgccaccggcgaggatgtgagcgccaatctgcgcaccgtcaaggccattccgctgcgc
ctgcgtggcacgggctggcccgaggtgctggaggtgcgtggcgaggtctacatgccgcgt
gccgcgttcgaggcctacaacgcgcagatgcgcctgcagggcggcaaggtgctggctaat
ccgcgcaatggtgcggccggttcgttgcgccagctcgatgcacgcatcaccgcgcaacgg
ccgttgagtttttttgcctacggcgtgggcgaggtcgcggacggtgcgttgccgccgact
cactcgacgatgttggcgcagctgcgcgaatggggattcccggtcagccagctggtagag
gtggtgcagggcagcgagggcttgctgacgtactaccgacgcatcggtgaagcacgcgac
ggcctgccattcgatatcgatggcgtggtgtacaagctggacgatctggctggccagcgc
gagatgggctttgtctcgcgcgcaccgcgctgggcgctggcgcacaagttcccggcccag
gagcaatccaccacggtggaggcgatcgaaatccagatcggccgcaccggtgcggcaacg
ccggtggcacgtttgaagccggtgcacgtcgccggtgtggtggtgaccaacgcgaccttg
cacaacgccgatcagatcgcgcgcctggatgtgcgcgtgggcgacacggtgatcgtgcga
cgcgccggcgatgtgattccggaggtggccggtgtggtcgccgagcagcgccctgccggc
acccacgcttggcagatgccgacccaatgcccggtgtgcggctcggagatcgtgcgcgaa
gaaggccaggcggtgtggcgctgttcgggcgagctcacgtgcccggcgcagcgcaaggaa
gccttccgccattttgtgtcgcggcgcgcgatggacgtggacgggctgggcgaaaaattc
attgaagtgctggtcgacagtggcgtggtgcagggtgtggccgacctgtatctgctcaat
gtcgaccagctgctgcagctgcgtttgatcagcaccgccgacagcccgcatgcgttcttg
cgtgaagcacgcgagcacctggctgccggtgcgtatgcgcaggtcgagcaaaccatggtc
ggcatcggtgtggatcttgccggcgtgcagccggcgccgcagacctggcaggccgatctg
ttgcgcgcgggcctgccggcattcgactggaatcgcaagaaaatcgccaccaagtgggcc
gaaaacctgatcgaggcgatcgagacctcgcgcgacaccacgctggagcgcttcctgttt
gcgctgggcatcgagcatgtgggcgagagcacggccaaggcgttgtcggcgtggtttggg
gagctggatgtgatccgtcatctgccctggccgctgttcaagcgcgtgccggacatcggc
ggtgaagtggcgcgctcgctcgggcatttcttcgaccaggccgggaaccagcaggcgatc
gatgacctgctgcagcgtggtgtgcgcatcggcgatgcgcatccgccgtcgcccaagctg
cgcggcgcgctgagttttgcggtgctgctcgaagacctggatattcccaaggtcaccccg
gtgcgtgcgcagcaactggccgctgcaaccgcctccttcgatgcgttgatcgcctccgag
gccgacccgttgctgcaagccggtgtgccggcacctgtgatcgcctcgctgcagcagtgg
ttggcgcgtccggaaaacgcggcactggcaacggccgcgcaacgcgccatggacgcgttg
ctggcgcaattgccgcaggccgatgcggtgcaggccgggccgctggacggccagaccgtg
gtcatcaccggcacgctggccgcgctgacgcgcgatgccgccaagcagcgcctggaatcg
ctgggcgccaaggtggccggtagcgtctccaagaaaaccgcattcctggtggcgggcgaa
gaagccggctccaagctggacaaggcgcagagcctgggcgtggagatctgggatgaagcg
cggctgctggcgttcctgagtgagcacggtcaagcggtatga
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