Xylanimonas cellulosilytica: Xcel_2404
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Entry
Xcel_2404 CDS
T01135
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xce
Xylanimonas cellulosilytica
Pathway
xce03030
DNA replication
xce03410
Base excision repair
xce03420
Nucleotide excision repair
xce03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Xcel_2404
03410 Base excision repair
Xcel_2404
03420 Nucleotide excision repair
Xcel_2404
03430 Mismatch repair
Xcel_2404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xce03032
]
Xcel_2404
03400 DNA repair and recombination proteins [BR:
xce03400
]
Xcel_2404
Enzymes [BR:
xce01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Xcel_2404
DNA replication proteins [BR:
xce03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Xcel_2404
DNA repair and recombination proteins [BR:
xce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Xcel_2404
NER (nucleotide excision repair)
GGR (global genome repair) factors
Xcel_2404
MMR (mismatch excision repair)
DNA ligase
Xcel_2404
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Xcel_2404
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
SnoaL_4
Zn_ribbon_TFIIB
DUF8512
BRCT_2
Zn_ribbon_CLPX_N
Motif
Other DBs
NCBI-ProteinID:
ACZ31419
UniProt:
D1BVV0
LinkDB
All DBs
Position
complement(2615150..2617642)
Genome browser
AA seq
830 aa
AA seq
DB search
MTTPDLSTAELDEQAAQRRWAELRDLVEADQRAYYEHDSPLVSDAEYDARLHELAALEAA
HPALATPESPTQRVGGAAASGFTTVEHVERMLSLDNVFSVDELRDWDARVARDLGAGDVG
YLAEVKIDGLAIALLYEHGRLTRAATRGDGRTGEDVTVNALRIADVPQQLDGEGHPALVE
VRGEIFIPTASFTRLNELQEELRARVVEDTRARQGARFDEEKARLAALRRFPTFANPRNA
AAGGLRQQLDKKDGLERDAGLARIESLRLYVHGIGALQWEAGEHAELGRQSDAYSYFATW
GLPVSPHNRVVNGIDAVIEMIEHFGAHRHDIEHELDGIVVKVDALPDQQRLGATSRAPRW
AIAYKYPPEEVNTRLLAIQVGVGRTGRATPYAVMEPVLVAGSTVRQATLHNQDVVRAKGV
RVGDVVVLRKAGDVIPEILGPVPAAADDGFPRHDFVMPAQCPECGTPLRPMKEGDVDLRC
PNARSCPAQVRGRVEHIGSRGGLDVEGLGEVAAAALTQPLEPADPPLDTEAGLFSLTIEE
LLPIRVVVRDPETGLPRPYDGVGESAELPTADGATFTAKVVRPFQRLVERTYPPGTETMT
PAERRKAGIRKDHPVYGPAKSAQVLLDELDRAKTKDLWRQLVSLNIRHVGPVAARALADW
FGSLDAIRAASSEELAAVEGVGPVIGAELQAWFDVDWHVDIVDSWTRAGVRFATPGHPGP
EAMAAQAAAGAAPQGPLAGLTVVVTGSLDGFTRDGAKEAIIAAGGKSAGSVSKKTDYVVV
GENAGSKAAKAEELGLPVLDEAGFVALLDGGPAALGADGGGDGDAADDQG
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgccggacctctcgaccgcggagctcgacgagcaggccgcgcagcgccgctgg
gcggagctgcgtgacctcgtcgaggcggaccagcgcgcgtactacgagcatgactcgccg
ctggtctccgacgccgagtacgacgcgcggttgcacgagctcgccgcgctggaggcggcc
caccccgcgctggcgacccccgagtcgccgacgcagcgcgtgggcggagccgcggcttcg
gggttcacgaccgtcgagcacgtggagcggatgctctcgctcgacaacgtgttctcggtc
gacgagctgcgcgactgggacgcgcgcgtcgcccgcgacctgggcgccggggacgtcggc
tacctcgccgaggtgaagatcgacggcctggccatcgccctgctctacgagcacggccga
ctgacccgcgccgccacgcgcggggacggccgcacgggcgaggacgtcacggtcaacgcc
ctgcggatcgcggacgtcccccagcagctcgacggcgagggccacccggcgctcgtcgag
gtgcgtggcgagatcttcatcccgacggcgtcgttcacgcggctcaacgagctccaggag
gagctgcgcgcccgggtcgtggaggacacgcgggcccggcagggcgcccgcttcgacgag
gagaaggcgcggctcgcggcgctgcgccgcttcccgacgttcgccaacccccgcaacgcg
gccgcgggcggcctgcgccagcagctcgacaagaaggacggcctcgagcgggacgcgggg
ctggcacgcatcgagtcgctgcgcctgtacgtccacggcatcggcgccctgcagtgggag
gcgggggagcacgccgagctcggccgccagtcggacgcgtactcctacttcgccacctgg
ggtctgcccgtctcgccccacaaccgggtcgtgaacggcatcgacgccgtgatcgagatg
atcgagcacttcggcgcccaccggcacgacatcgagcacgagctcgacggcatcgtcgtc
aaggtggacgccctgcccgaccagcagcgcctcggcgcgaccagccgtgccccacgctgg
gccatcgcctacaagtacccgcccgaggaggtcaacacccgcctgctcgcgatccaggtg
ggcgtggggcgcaccggccgggccaccccgtacgcggtgatggagccggtgctcgtcgcg
ggctccaccgtgcggcaggccacgctgcacaaccaggacgtcgtccgtgccaagggcgtg
cgggtcggcgacgtcgtcgtgctgcgcaaggcgggcgacgtcatccccgagatcctcggc
cccgtccccgccgccgccgacgacggcttcccccgccacgacttcgtcatgcccgcgcag
tgccccgagtgcggcacgcccctgcggcccatgaaggagggcgacgtcgacctgcgctgc
cccaacgcccgctcctgccccgcccaggtgcgcgggcgcgtggagcacatcggctcgcgc
ggcgggctcgatgtcgagggcctcggcgaggtcgccgccgccgcgctcacccagccgctc
gaaccggcagacccgccgctcgacaccgaggcgggtctcttcagcctcacgatcgaggag
ctgctgcccatccgcgtcgtcgtccgcgaccccgagaccggcctgccgcgcccgtacgac
ggcgtgggggagtccgccgagctgcccaccgccgacggcgccaccttcaccgccaaggtg
gtgcgcccgttccaacggctcgtcgagcgcacctacccgcccggcaccgagacgatgacc
cccgccgagcgccgcaaggccggcatccgcaaggatcaccccgtctacggccccgccaag
tccgcgcaggtgctcctcgacgagctcgaccgggccaagaccaaggacctgtggcgtcag
ctcgtctccctcaacatccggcacgtcggccccgtggcggcccgggcgctcgcggactgg
ttcgggtcgctcgacgccatccgtgcggcctcgtcggaggagctggccgccgtggagggc
gtcggcccggtcatcggcgccgagctccaggcctggttcgacgtcgactggcacgtcgac
atcgtcgactcctggacccgtgccggtgtccggttcgccacgccgggccacccgggcccg
gaggcgatggccgcgcaggccgccgcgggcgccgcaccgcagggcccgctcgccggcctc
accgtcgtcgtcaccgggtcgctcgacggcttcacgcgcgacggcgccaaggaggcgatc
atcgccgcgggcgggaagtccgcgggctcggtgagcaagaagacggactacgtcgtcgtc
ggggagaacgcgggctcgaaggccgccaaggccgaggagctcgggctgccggtgctcgac
gaggcggggttcgtggcactcctcgacggtgggccggcagcgctcggcgcggacggcgga
ggtgacggtgacgcggcggacgaccaggggtga
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