Xanthomonas citri pv. citri mf20: J172_01772
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Entry
J172_01772 CDS
T03781
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xcf
Xanthomonas citri pv. citri mf20
Pathway
xcf03030
DNA replication
xcf03410
Base excision repair
xcf03420
Nucleotide excision repair
xcf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J172_01772
03410 Base excision repair
J172_01772
03420 Nucleotide excision repair
J172_01772
03430 Mismatch repair
J172_01772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xcf03032
]
J172_01772
03400 DNA repair and recombination proteins [BR:
xcf03400
]
J172_01772
Enzymes [BR:
xcf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J172_01772
DNA replication proteins [BR:
xcf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J172_01772
DNA repair and recombination proteins [BR:
xcf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J172_01772
NER (nucleotide excision repair)
GGR (global genome repair) factors
J172_01772
MMR (mismatch excision repair)
DNA ligase
J172_01772
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J172_01772
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AJZ08345
LinkDB
All DBs
Position
1873121..1875622
Genome browser
AA seq
833 aa
AA seq
DB search
MTASPDPAQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADS
PTQRVGHLAASRFAEVRHAMPMLSLGNAFSDEEVTEFVRRISERLEVRQPLFSAEPKLDG
LAISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPRVLEVRGEVYMPR
AAFEAYNAQMRAQGGKILANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQA
HSAILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGEARDGLAFDIDGVVYKLDDLAGQR
EMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATL
HNADQIARLDVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSEIVRE
EGQAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVKGVADLYLLS
VDQLLQLRLISTADSPHAFLREAREHLASGAYAQLEASVVGIGVDLAGERDVPQTWQADL
LRAGLPSFDWNRKKIATKWAENLIEAIEISRDTTLERFLFALGIEHVGESTAKALSAWFG
DLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQKAIDHLLARKVRIGDTHPPSPKL
RGELSLANLLEDLEIPKVTPIRAAQIATAFGSIDALRNGGPEPLVEAGVPQSVAESLAAW
LLVPANDTLAVNAQRKLSELLAMLPEAGEEKTGPLDGQTVVITGTLAALTRDAAKQRLEA
LGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGDHGQQP
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgactgccagcccggatcccgctcagcgcatcgatgccctgcgccgtcgaatcgaagac
gccaactaccggtatcacgtactcgacgagccgcagatggccgatgccgattacgacaag
ctgatgcgcgagcttgaggccttggagcgcgcgcacccggaattggccagcgccgattcg
ccaacccagcgcgtcggccatctggccgcctcgcggtttgccgaagtgcggcatgccatg
ccgatgctgtcgttgggcaatgccttcagcgatgaggaagtgaccgagttcgtgcggcgc
atcagcgagcggctggaggtcagacaaccgctgttttcggccgaacccaaactcgatggc
ctggcgatcagcctgcgctacgaaaatggcgagttcgtgcagggcgccacgcgcggcgat
ggcgccaccggcgaggatgtcagcgccaacctgcgcaccgtcaaagcgattccgttgcgt
ctgcgcggcgagggttggccgcgggtgctggaagtgcgcggcgaggtctacatgccacgt
gctgcgttcgaagcctacaacgcgcagatgcgtgcccagggcggcaagatactggccaac
ccgcgcaatggcgcggccggctcgctgcggcagctggatgcgcgcatcaccgcgcagcgc
ccgctgagcttcttcgcctacggcgttggcgaagtgagcgaaggcgcattgcctcaggcc
cattcggcgatcctggcgcagctgcgcgcgtggggttttccggtcagcgcgctggtcgag
gtcgtgcagggcagcgatggtctgctggcgtattaccagcgcatcggtgaggcgcgcgat
ggcctggccttcgatatcgatggcgtggtgtacaagctcgacgatctggccgggcaacgc
gaaatgggcttcgtctcgcgcgcgccgcgttgggcgatcgcgcacaagttccccgcacag
gagcagtccaccacggtggaggcgatcgagatccagatcggccgcaccggtgcggccacg
ccggtggcgcgcctgaagccggtgcatgtggccggggtgatcgtcaccaatgccacgctg
cacaacgccgaccagatcgcgcggctggatgtgcgcgtgggcgacacggtgatcgtgcgc
cgcgccggtgatgtcatccctgaagtggccgcggtggtggccgaccagcgcccgcccggc
acccaggcctggcagatgcccacgcagtgcccggtgtgcggttcggagatcgtgcgcgaa
gaaggccaggcggtctggcgctgttccggcgagttgacctgcccggcgcagcgcaaggag
gcgtttcggcatttcgtctcgcggcgcgcgatggatgtggacggcctgggcgaaaaattc
atcgaagtgctggtcgacagtggcctggtgaagggcgtggccgacctgtatctgctgagc
gtggaccagctgctgcaattgcgcctgatcagcacggccgacagcccgcacgcgttcttg
cgcgaggcgcgcgagcatctggccagcggtgcatatgcgcagctggaagccagcgtggtc
gggatcggcgtggacctggccggggagcgcgacgtgccgcagacctggcaggccgatctg
ctccgcgcaggcttgccgagcttcgactggaaccgcaagaagatcgccaccaagtgggcg
gagaatctgatcgaggcgatcgaaatatcgcgcgataccacgctggagcgttttctgttt
gcgctgggcatcgagcatgtgggcgaaagcacggccaaggccttgtcggcctggttcggc
gatctggaattgatccggcatctgccgtggccgctgttcaagcgcgtgccggatatcggc
ggcgaagtggcgcgctcgctggggcacttcttcgatcaggccggcaatcagaaggccatc
gatcatctgctggcgcgcaaggtgcgcatcggcgacacccatccgccttcgccgaagctg
cgcggcgagctgagcttggccaatttgctggaggacctggagattcccaaggtgacgccg
attcgcgccgcccagatcgcgactgcgtttggttccatcgatgccctgcgcaatggcggt
cccgagcctctcgtcgaagccggtgtaccgcagtcagtggccgagtcgctcgcggcctgg
ctgttggtgccggccaacgatacgctcgcggttaatgcccagagaaagctttccgagctg
ctggcgatgctgccggaggccggcgaggaaaagaccggcccgctcgatggccagaccgtg
gtcatcaccgggacgctggctgcgctgacgcgcgatgcggccaagcagcggctggaagcg
ctgggcgccaaggtcgccggtagcgtctccaagaagaccgcgtttctggtggccggcgaa
gaagccggttccaagctcgacaaggcgcaatcgctgggcgtggagatctgggacgaagcg
cgtttgctggccttcctgggcgaccacggccaacagccatga
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