Candidatus Xianfuyuplasma coldseepsis: G4Z02_03645
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Entry
G4Z02_03645 CDS
T08386
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xcl
Candidatus Xianfuyuplasma coldseepsis
Pathway
xcl03030
DNA replication
xcl03410
Base excision repair
xcl03420
Nucleotide excision repair
xcl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G4Z02_03645 (ligA)
03410 Base excision repair
G4Z02_03645 (ligA)
03420 Nucleotide excision repair
G4Z02_03645 (ligA)
03430 Mismatch repair
G4Z02_03645 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xcl03032
]
G4Z02_03645 (ligA)
03400 DNA repair and recombination proteins [BR:
xcl03400
]
G4Z02_03645 (ligA)
Enzymes [BR:
xcl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G4Z02_03645 (ligA)
DNA replication proteins [BR:
xcl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G4Z02_03645 (ligA)
DNA repair and recombination proteins [BR:
xcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G4Z02_03645 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G4Z02_03645 (ligA)
MMR (mismatch excision repair)
DNA ligase
G4Z02_03645 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G4Z02_03645 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH_5
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
QMS84882
UniProt:
A0A7L7KRI6
LinkDB
All DBs
Position
complement(764239..766224)
Genome browser
AA seq
661 aa
AA seq
DB search
MDPKQRVKELQRLLKTYNYEYYVLDNPTVSDQEFDALLHELIRLEEQYPELRTEDSPTVR
VGSVVIDKFEKVEHDHPMMSLANAFNEEDLRSFDQRVRKVYPNATYNIELKIDGLAGSIK
YEGGSLVLGATRGNGVVGENITTNVKTIKSIPLSINYILPLEVRGEIFMSKKSFEKANND
RLSEGQEPFKNPRNAASGSVRQLDSKIASKRGLDMFIYSIVDPASHGLTSHKQSLAFAKD
LGFKINPLSTTCTSIDDVIEYIDTYTNKRHDLSYDIDGIVIKVDDVTMYDTIGYTAKSPK
WAIAYKFPAEEVITRINSITFQVGRTGQITPVANLDPVIVQGSTVSRATLHNEDYVIDKD
IREQDYVVIKKAGDIIPEVVRVVTERRTGNENPFHMISQCPVCGSTLVRNEGEADHYCMN
PHCEAKKIESLIHFASRKAMNIEGLGDRIIEQFFNDGLVQSIPDIYTLHNHRMDLVVKEG
FGQKSIQKLLDNIEASKANNLDKLIFGLGIRHVGEKVSKVLASNYPSLEAFFDCKIEDLT
AIDEIGDVIASSVYHYFHDEDIKNMLLQLHMLGLNTSYTSNIQQKAEFSGKTFVLTGKLE
QYKRDEAKQLIESMGGKVSGSVSTKTDYVVAGTDAGSKLTKANQLGVTVLTEDEFTALLE
K
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggacccaaaacaacgtgttaaagagttgcaacgtttattaaaaacctataactatgag
tattatgtactggataatccgacggttagtgatcaggagttcgatgccttacttcatgaa
ttaattcgtttagaagaacaatatccggagttacgaacagaagattcaccgaccgtacgc
gtcgggagcgtcgtcatcgataaatttgaaaaagtagaacacgatcatccgatgatgagt
ctcgcgaatgcgtttaatgaagaggatttacgatcatttgatcaacgggtacgcaaagtg
tatccaaatgccacttacaatatcgaactaaaaattgacggactcgctggaagtattaaa
tacgaaggcggttctcttgtgttgggtgcaacgcgaggaaatggtgtcgttggggaaaat
atcacaaccaatgtaaaaaccatcaaatccataccgttatccattaattacatccttccc
cttgaagtccggggagaaattttcatgtcgaaaaaatcatttgagaaagctaacaacgat
cgactatcagaagggcaagaaccctttaaaaacccacgtaatgcagcaagtggtagtgtt
cgccaactagacagtaaaatcgcttctaaacgcggtttagatatgtttatctatagcatc
gttgatcctgcgagtcatggcttaacctcgcacaaacaatccttggcattcgccaaagat
ttgggattcaagattaatccattaagtacgacatgcacatcgatcgatgacgtgattgaa
tacatcgatacatacacgaacaaacgtcatgatttatcctatgatattgatggaatcgtt
attaaagttgacgatgttacaatgtatgatacgattggatatactgcgaaaagcccaaaa
tgggcaattgcctataaattcccagcagaagaagtcattactagaatcaactcgattacc
ttccaagttggtcgtaccgggcaaattacccctgtcgcgaatttagatcccgttatcgtt
caaggaagtacggtatcacgagcgacacttcataacgaagattatgttatcgataaggat
atccgcgaacaggactatgtggtaattaaaaaagctggagatattatccccgaagtagtt
cgagttgttactgaacgacgcacaggcaatgagaatccatttcatatgatttcacaatgt
cctgtatgtggaagtactttggttcgaaacgaaggagaagcggatcactattgcatgaat
cctcactgtgaagcaaaaaaaattgagtcattgattcattttgcttcccgtaaagcgatg
aacattgaaggactaggagatcgcatcattgagcaatttttcaatgatggattagtgcaa
tctattccggatatttatacccttcataatcatcgtatggacttggttgtcaaagaggga
tttggccaaaaaagcatccaaaaattattggataacattgaagcttcaaaagcgaataac
ttagataagcttatatttggactcggtattcgccacgttggcgagaaggtatccaaagtt
ctcgcaagtaactatccatctctagaagcgttttttgactgcaagatcgaagatttgact
gccattgatgaaattggagatgttattgctagtagtgtctaccactattttcatgatgaa
gatataaagaatatgctacttcaattgcacatgttaggattgaatacaagctatacatcc
aacattcaacaaaaagctgaatttagcggtaaaacttttgtgttaaccggtaaattagaa
cagtataaacgcgatgaagccaaacaactcattgaatccatgggtggtaaagtatccggc
tctgtcagtacgaaaaccgattatgtggttgctggaacagacgccgggagtaaactaacc
aaagccaatcagttaggcgttaccgtattgacagaggatgaatttacagcattactagaa
aaatag
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