KEGG   Xanthomonas citri pv. citri MN12: J164_01777
Entry
J164_01777        CDS       T03735                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
xcm  Xanthomonas citri pv. citri MN12
Pathway
xcm03030  DNA replication
xcm03410  Base excision repair
xcm03420  Nucleotide excision repair
xcm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:xcm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    J164_01777
   03410 Base excision repair
    J164_01777
   03420 Nucleotide excision repair
    J164_01777
   03430 Mismatch repair
    J164_01777
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xcm03032]
    J164_01777
   03400 DNA repair and recombination proteins [BR:xcm03400]
    J164_01777
Enzymes [BR:xcm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     J164_01777
DNA replication proteins [BR:xcm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     J164_01777
DNA repair and recombination proteins [BR:xcm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     J164_01777
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     J164_01777
   MMR (mismatch excision repair)
    DNA ligase
     J164_01777
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      J164_01777
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD Nlig-Ia HHH_5 PTCB-BRCT
Other DBs
NCBI-ProteinID: AJY95074
UniProt: A0A0U5FC04
LinkDB
Position
1873132..1875633
AA seq 833 aa
MTASPDPAQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADS
PTQRVGHLAASRFAEVRHAMPMLSLGNAFSDEEVTEFVRRISERLEVRQPLFSAEPKLDG
LAISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPRVLEVRGEVYMPR
AAFEAYNAQMRAQGGKILANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQA
HSAILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGEARDGLAFDIDGVVYKLDDLAGQR
EMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATL
HNADQIARLDVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSEIVRE
EGQAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVKGVADLYLLS
VDQLLQLRLISTADSPHAFLREAREHLASGAYAQLEASVVGIGVDLAGERDVPQTWQADL
LRAGLPSFDWNRKKIATKWAENLIEAIEISRDTTLERFLFALGIEHVGESTAKALSAWFG
DLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQKAIDHLLARKVRIGDTHPPSPKL
RGELSLANLLEDLEIPKVTPIRAAQIATAFGSIDALRNGGPEPLVEAGVPQSVAESLAAW
LLVPANDTLAVNAQRKLSELLAMLPEAGEEKTGPLDGQTVVITGTLAALTRDAAKQRLEA
LGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGDHGQQP
NT seq 2502 nt   +upstreamnt  +downstreamnt
atgactgccagcccggatcccgctcagcgcatcgatgccctgcgccgtcgaatcgaagac
gccaactaccggtatcacgtactcgacgagccgcagatggccgatgccgattacgacaag
ctgatgcgcgagcttgaggccttggagcgcgcgcacccggaattggccagcgccgattcg
ccaacccagcgcgtcggccatctggccgcctcgcggtttgccgaagtgcggcatgccatg
ccgatgctgtcgttgggcaatgccttcagcgatgaggaagtgaccgagttcgtgcggcgc
atcagcgagcggctggaggtcagacaaccgctgttttcggccgaacccaaactcgatggc
ctggcgatcagcctgcgctacgaaaatggcgagttcgtgcagggcgccacgcgcggcgat
ggcgccaccggcgaggatgtcagcgccaacctgcgcaccgtcaaagcgattccgttgcgt
ctgcgcggcgagggttggccgcgggtgctggaagtgcgcggcgaggtctacatgccacgt
gctgcgttcgaagcctacaacgcgcagatgcgtgcccagggcggcaagatactggccaac
ccgcgcaatggcgcggccggctcgctgcggcagctggatgcgcgcatcaccgcgcagcgc
ccgctgagcttcttcgcctacggcgttggcgaagtgagcgaaggcgcattgcctcaggcc
cattcggcgatcctggcgcagctgcgcgcgtggggttttccggtcagcgcgctggtcgag
gtcgtgcagggcagcgatggtctgctggcgtattaccagcgcatcggtgaggcgcgcgat
ggcctggccttcgatatcgatggcgtggtgtacaagctcgacgatctggccgggcaacgc
gaaatgggcttcgtctcgcgcgcgccgcgttgggcgatcgcgcacaagttccccgcacag
gagcagtccaccacggtggaggcgatcgagatccagatcggccgcaccggtgcggccacg
ccggtggcgcgcctgaagccggtgcatgtggccggggtgatcgtcaccaatgccacgctg
cacaacgccgaccagatcgcgcggctggatgtgcgcgtgggcgacacggtgatcgtgcgc
cgcgccggtgatgtcatccctgaagtggccgcggtggtggccgaccagcgcccgcccggc
acccaggcctggcagatgcccacgcagtgcccggtgtgcggttcggagatcgtgcgcgaa
gaaggccaggcggtctggcgctgttccggcgagttgacctgcccggcgcagcgcaaggag
gcgtttcggcatttcgtctcgcggcgcgcgatggatgtggacggcctgggcgaaaaattc
atcgaagtgctggtcgacagtggcctggtgaagggcgtggccgacctgtatctgctgagc
gtggaccagctgctgcaattgcgcctgatcagcacggccgacagcccgcacgcgttcttg
cgcgaggcgcgcgagcatctggccagcggtgcatatgcgcagctggaagccagcgtggtc
gggatcggcgtggacctggccggggagcgcgacgtgccgcagacctggcaggccgatctg
ctccgcgcaggcttgccgagcttcgactggaaccgcaagaagatcgccaccaagtgggcg
gagaatctgatcgaggcgatcgaaatatcgcgcgataccacgctggagcgttttctgttt
gcgctgggcatcgagcatgtgggcgaaagcacggccaaggccttgtcggcctggttcggc
gatctggaattgatccggcatctgccgtggccgctgttcaagcgcgtgccggatatcggc
ggcgaagtggcgcgctcgctggggcacttcttcgatcaggccggcaatcagaaggccatc
gatcatctgctggcgcgcaaggtgcgcatcggcgacacccatccgccttcgccgaagctg
cgcggcgagctgagcttggccaatttgctggaggacctggagattcccaaggtgacgccg
attcgcgccgcccagatcgcgactgcgtttggttccatcgatgccctgcgcaatggcggt
cccgagcctctcgtcgaagccggtgtaccgcagtcagtggccgagtcgctcgcggcctgg
ctgttggtgccggccaacgatacgctcgcggttaatgcccagagaaagctttccgagctg
ctggcgatgctgccggaggccggcgaggaaaagaccggcccgctcgatggccagaccgtg
gtcatcaccgggacgctggctgcgctgacgcgcgatgcggccaagcagcggctggaagcg
ctgggcgccaaggtcgccggtagcgtctccaagaagaccgcgtttctggtggccggcgaa
gaagccggttccaagctcgacaaggcgcaatcgctgggcgtggagatctgggacgaagcg
cgtttgctggccttcctgggcgaccacggccaacagccatga

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