Xiphophorus couchianus (Monterrey platyfish): 114134831
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Entry
114134831 CDS
T05908
Name
(RefSeq) otoferlin-like isoform X1
KO
K19949
otoferlin
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114134831
Membrane trafficking [BR:
xco04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
114134831
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
FerB
Ferlin_C
dsrm_Ferlin
FerI
Motif
Other DBs
NCBI-GeneID:
114134831
NCBI-ProteinID:
XP_027857455
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All DBs
Position
19:4543337..4563777
Genome browser
AA seq
1782 aa
AA seq
DB search
MKRSKHRGQKEDNGGDEPAILETENMLMGGPDPDTISLASVTAVTTNVSNKRSKPDIKME
PSSGRPMDYQVSVTVIEARQLVGLNMDPMVCVEIGDEKKYTSMKESTNCPYYNEYFVFDF
HIPPDVMFDKILKVSVIHSKNLLRSGTLVGSFKMDVGTVYFQPEHQFYHKWALLSDPDDI
TAGCKGYVKCDITVVAKGDTIKTPHKANESEDDDIEGNLLLPEGVPAERQWARYYLKIYK
AEGLPRMNTSIMANVKKAFIGENKDLVDPYVQVLFAGQKGKTSVQKSCYEPIWNEQIVFT
EMFPPLCKRMKIQIRDSDKVNDVAMGTHFLDLKKISNDGDKGFLPTLGPAWVNMYGSTRT
YTLMDEYQELNEGLGEGVSFRARLLISLGVEILDPSSPDITSSTEVQVEGVPNISETATG
KVEDFFLFGSFLEATMIDRKIGDKPISFEVTIGYYGNENDGVIQPKTKGKKGDGAEEETE
LIHNSSEEEMDDDGDLTSVSTTPPMKPVITDRNYFHLPYFERKPCIYIKSWWQDQRRRLY
NSNIIDNIANKLEDGLNDVQEIIKTEKTYPERRLRGVLEELSQGCSQFIALANKDHNQSG
RTKLDRERLKLCLSEVEAIGQQAKTMRTQVKKSTVRDRLKLAQNFHTKLRFLADEPQHSV
PDVFIWMISNGKRIAYARVPSKDILYSGIDEERGKDCGKVKTIFLRIPGKKGFGPAGWTV
QSKLEIYLWLGLNRQRKDYLSGLPNGFEENKLSGMPSSPPISLTYMMKQIFQLRVHMYQA
RSLFAADSTGLSDPFARVFFSTQSQVTEVLAETLCPTWDQLLVFENVELFGEAYELRDDP
PIIVIELYDQDTVGKADFMGRTFAKPLVKMADEHYGPPRFPPQLEYYQIYRGNGAAGEML
AAFELLQIGPNGKADLPPIDGPTDMDRGPILPVPLGIRPVLSKYRIEVLFWGLRDLKRVN
LAQVDRPRVDIECAGKGVQSALIPNYKKNPNFSTLVKWFEVDLPENELLHPPLNIRVVDC
RAFGRYTLVGSNAVSSLRKFIYRGSDKQANNWSTTEEIIVVSMETEPAFKKMDTVVKLDS
CSEAVIKVEDDDKDEKGKKKKRKKGDEPEEEELDESMLDWWSKYFASIETLTEALRAQEA
ALSDSEEKEDMDIAHGGADDAPAKAPKRGKGKKDKKRAAVDPFEKKKPKLDELKVYPKEL
ESEFDNFEDWLHTFYLFRGKGGDDDDQNVTDEDRIVGKFKGSLCMYKVSDDLPRDMSFDS
NLGMFQNIPNNDPVNVLVRIYVVRATDLHPADINGKADPYIAIKLGKTEIKDKENYISKQ
LNPLFGKSFDVEATFPMDSTLTVSIYDWDLVGTDDLIGETKVDLENRFYSKHRATCGISC
NYAIHGYNVWRDPMKPTHVLAKLCKDGKLDGPHYGPGGRVKVENRVFMAPTEIEDENGLK
KQTDEHLALTVLRHWDGIPKAGCKLVPEHVETRPLLHPDKPGIEQGRIEMWVDLFPKDKT
APGPALDISPRKPKKFELRVIIWNTDEVVLEDDDIFTGEKSSDIFVRGWLKGQQEDKQDT
DVHYHSITGEGNFNWRFIYPFDYLVAEEKIVISKKESMFAWDETEYKIPPRLNLQVWDAD
HFSADDFLGAIELDLNRFPRGAKTAKQCTIEMVTNEAEMPLVSIFKQKRIKGWWPFVARN
EEDDEFELTGKVEAELHLLTGEEAEKSPAGDGRNEPDPLEKPNRPDVALLWFLIPLKAAK
HLVCDQYRWLTIKIVTALLLLAILGLFLYNMPGYMVKKMLGA
NT seq
5349 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcagtaagcaccgtggacaaaaggaggacaacggcggagatgagccagccatt
ttggagacggagaacatgttaatgggaggtccagatcccgacaccatctctttggcctcc
gtcacagccgtcaccaccaatgtttcaaataaaagatcaaagccagacatcaagatggag
cccagctctggacgacccatggattaccaggtcagtgtgacggtgattgaagccaggcaa
ctggttggcctgaacatggatcccatggtctgtgtggagatcggagatgagaaaaagtac
acctctatgaaggagtcgaccaactgcccttactacaacgaatactttgtgtttgacttc
cacatcccgccagatgtcatgttcgacaaaatcctgaaagtgtccgtgatccactccaaa
aatcttctgcgaagtggaacgctggttggatcttttaaaatggatgttggcacagtctac
ttccagccagagcatcagttttaccacaaatgggccttgttgtctgacccggatgacatc
acagcaggctgcaaaggctacgttaaatgtgacatcacagttgtggctaaaggagacacc
attaaaactccacacaaggccaatgagtctgaagacgatgacatagaggggaatctgctg
ctacctgagggcgttcctgcagagcgacagtgggctcgttactacctgaagatctacaaa
gcagagggactccccagaatgaacaccagcatcatggccaacgtcaagaaggcgtttata
ggagaaaataaagacctggttgatccctacgtccaagtgctctttgcagggcagaagggc
aaaacatcggtgcagaagagctgctatgagcccatctggaacgagcagattgttttcacg
gagatgtttcctcccctctgcaagcgcatgaagatccagatccgggactcggataaagtg
aacgatgtggccatgggaacacacttcttagatctgaagaagatttccaatgatggggac
aaaggcttccttcccacactggggcccgcctgggtgaacatgtatggctccacccgcacc
tacaccctgatggacgagtaccaggagctaaacgaagggctcggcgaaggcgtgtccttc
agggcccgtctgctcatcagcctgggcgtggagatcctggacccgtcctcgcctgacatc
accagctccaccgaggtccaggtggagggagtgcccaacatctccgagactgctactggg
aaggtcgaggatttcttcctgtttgggtctttcctggaagccacaatgatagacagaaag
atcggcgacaagccaatcagctttgaggtcacaataggttactatggaaacgagaacgat
ggcgtcatccaacccaaaacgaaggggaagaagggcgacggtgctgaagaggaaaccgag
ctgatacacaactccagcgaggaggagatggacgacgacggagacctgacttcagtgtcc
accactccacccatgaaacctgtcatcactgaccgaaactatttccatctgccctatttt
gagaggaagccatgcatttacatcaaaagttggtggcaggaccagaggagacggctgtac
aactccaacatcatcgacaacattgcgaacaaactggaggatggactgaacgacgtgcag
gagatcatcaaaacagagaagacctatcctgaacgaaggctgagaggcgttctcgaggaa
ctcagccaaggatgcagtcaatttattgctctggcaaacaaggatcacaatcagtctggc
agaaccaaactggacagggagagactgaagctttgcttgtcagaagtggaggccattggt
caacaagcaaagactatgaggactcaagtgaagaagagcacagtcagggataggctcaag
ctggctcagaacttccacacaaagcttcgcttcctagccgacgagccccagcacagtgta
cctgatgttttcatctggatgataagcaacggaaagcgcatcgcttacgcccgggttcct
tccaaagacatcctgtactccggtatagatgaggagaggggaaaagattgcggcaaggtc
aaaacaattttcctgaggatccctggtaaaaaaggtttcggacctgctggctggacagtt
cagtccaagttagagatttacctgtggctgggcctgaacaggcagcgcaaagactacctg
agcggcctgcccaacgggtttgaggaaaacaagttgtccggcatgccttcctcaccaccc
atcagccttacctacatgatgaagcaaatcttccagctgagggtccatatgtaccaggct
cgcagcctgtttgctgctgacagcacaggtctgtctgatcccttcgcaagagttttcttc
tcaacccaaagccaagtcacagaggtgctggctgagaccctctgccccacatgggaccag
ctgctggtgtttgagaacgtagagttgtttggagaggcctatgaactgagggatgatcca
cccattattgtcattgagctctacgatcaggacacagtgggtaaagctgacttcatgggc
aggacgtttgctaagcctttggtcaagatggcggatgagcactatgggccgccgcgtttc
ccaccccagctggagtattatcagatctaccgcgggaacggtgccgctggagaaatgctg
gcagcctttgagcttctccagattggccccaatggaaaagcggaccttcctcccatagac
gggcctacagatatggaccgcggcccaatcctgccggtgcctctggggattaggccagtg
ctcagcaagtacaggattgaggttttgttctggggcttgagggacttgaagagggtgaac
ctggcccaggtggatcggcctcgtgtggacattgagtgtgcagggaagggcgttcagtcg
gccctcatccccaactacaaaaagaaccccaacttcagcactcttgtcaagtggttcgaa
gtggatttgccagagaacgagctgcttcaccctccgctgaacatccgcgtggtggactgc
agagcttttggtcgctacactttggtcggctccaacgccgtcagcagcctgcgcaagttc
atctacaggggatcagacaagcaggccaacaactggtccactacggaggaaattattgtg
gtaagcatggaaaccgagcctgccttcaagaagatggacaccgtggtcaaactggactct
tgctctgaagctgtgatcaaagttgaggacgacgacaaagacgagaaaggtaaaaagaag
aagaggaagaagggggacgaacctgaagaggaggaacttgatgagagcatgttggactgg
tggtccaaatattttgcctcgattgaaactttaactgaggctctcagggctcaggaggca
gctctctcagattcagaagaaaaggaagacatggacatcgctcatggtggagctgacgac
gctccagcgaaagcccccaagagaggaaaaggaaagaaggacaagaaaagggcagctgtg
gatccgtttgaaaagaaaaagccaaagttggatgagctgaaggtgtatccaaaggaactg
gaaagtgaatttgacaactttgaggactggctccacaccttttacctgttcagagggaag
ggcggtgacgacgacgaccaaaatgtgacggatgaggacaggatcgtcggaaagttcaaa
ggttcgctgtgcatgtacaaagtgtcggatgatttgcccagagacatgagcttcgactcc
aacttaggaatgtttcagaacatccctaacaatgaccccgttaacgtcctggtccgcatt
tatgtcgtcagggcgacagatctgcatccggcggacataaatgggaaagctgacccctac
atcgcaatcaagctggggaaaacagagatcaaagacaaggagaactacatttccaagcag
ctgaaccctttgtttggcaaatcctttgacgtggaggccacgttccccatggattccact
ctgacggtgtcaatttatgactgggacctggtgggaaccgatgacctgattggagaaaca
aaggtcgacctggagaaccgcttctacagcaaacacagagccacatgtgggatttcatgc
aactacgccatccatggttacaacgtgtggcgagaccccatgaagcccacacatgtcctg
gctaagctgtgtaaggacggcaaactggacggcccacactacggccccggaggaagggtg
aaggtggagaaccgggtcttcatggcaccgactgagatcgaggatgaaaacggcttaaag
aagcagacggacgagcaccttgctctgactgtgctgaggcattgggacgggattcccaaa
gccggctgcaaactggtcccagagcacgtagaaaccagaccgctgctccatccggacaaa
ccgggaatcgaacaaggaagaatcgagatgtgggtggacctgttccccaaggacaagacc
gcgcccggtcccgctcttgacatctcaccacggaaaccgaagaagtttgaactgagggtc
atcatctggaacacagatgaggtggttttagaggacgacgacatcttcacgggcgagaaa
tctagtgacatctttgtgcgaggatggctgaagggacagcaggaggacaagcaggacact
gacgtccactaccactccatcaccggggaggggaacttcaactggcgcttcatctaccct
ttcgactacctggtggccgaggagaagatagtcatctccaagaaggagtccatgtttgcc
tgggatgagaccgagtacaagatcccgcctcgacttaacctccaagtgtgggacgccgat
cacttctctgccgatgattttctgggtgcgatcgagctggatctgaaccgcttcccgcgt
ggcgccaagacggccaagcagtgcaccatcgagatggtgacaaacgaagcggagatgccg
ctggtctccatcttcaagcagaagaggatcaaaggctggtggccgtttgtcgccaggaac
gaagaagacgacgagtttgaactcacgggtaaggtggaagctgagctgcatcttctcacg
ggggaggaagctgagaaaagcccagctggagacgggcgcaacgagccagatcctctggag
aaacccaaccgcccagatgttgccctcctctggttcctcatcccgctcaaagcagcgaag
cacctggtgtgcgaccagtacaggtggctgaccatcaagatcgtcacggcgctcctgctg
ctggccatcctgggccttttcctctacaacatgcccggatacatggtgaagaaaatgctg
ggcgcttga
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integrated database retrieval system
