KEGG   Xiphophorus couchianus (Monterrey platyfish): 114135291
Entry
114135291         CDS       T05908                                 
Name
(RefSeq) small nuclear ribonucleoprotein-associated protein B'
  KO
K11086  small nuclear ribonucleoprotein B and B'
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    114135291
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xco03019]
    114135291
   03041 Spliceosome [BR:xco03041]
    114135291
   03032 DNA replication proteins [BR:xco03032]
    114135291
Messenger RNA biogenesis [BR:xco03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     114135291
Spliceosome [BR:xco03041]
 Complex A
  U1 snRNP components
   Sm proteins
    114135291
  U2 snRNP components
    114135291
 Complex B
  U1 snRNP components
    114135291
  U4/U6.U5 tri-snRNP components
    114135291
 Complex C
  U2 snRNP components
    114135291
DNA replication proteins [BR:xco03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     114135291
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 114135291
NCBI-ProteinID: XP_027858235
LinkDB
Position
20:3738360..3741118
AA seq 240 aa
MTVGKSSKMLQHIDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPE
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGVAGGPGVGRAAGRGVPAGAPM
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAGASIAGAPTQYPPGRGAPPPMARAA
PPPGMMGPPPGMRPPMGPPMGMPPGPGRGAPMGMPPPGMRPPPPGMRGPPPPGMRPPPRP
NT seq 723 nt   +upstreamnt  +downstreamnt
atgacggtggggaagagcagcaagatgctgcagcacatcgacttcaggatgaggtgcatc
ctgcaggacggccgcatcttcatcggaaccttcaaggccttcgacaaacacatgaacctc
atcctgtgcgactgcgacgagttccgcaagatcaagccaaagaactcgaagcagccggag
cgcgaggagaagcgggttctgggtctggttctgctgcggggggagaacctggtttccatg
acggtggaaggcccgccccccaaagatactgggatcgcccgggttcccctggcgggtgtg
gcgggcgggccgggtgtgggccgcgccgcgggtcggggtgtaccggccggggcgccgatg
cctcaggcgccggctggactggcggggccggtccgaggagtgggtgggccttcccagcag
gtgatgacgccgcagggcagaggcacagttgccgcggcggcagcaggcgccagcattgcc
ggcgccccgacgcagtacccccccgggcgaggagccccgccccctatggcccgagccgcg
ccccctccaggtatgatgggcccgccccccggcatgcggccccctatgggtcccccgatg
ggaatgccacccggtccaggccgcggcgccccaatgggaatgccgcctccaggcatgagg
ccgccaccccctgggatgagaggaccgccccctccagggatgaggccgccgcccaggcca
tga

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