Xiphophorus couchianus (Monterrey platyfish): 114136585
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Entry
114136585 CDS
T05908
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xco03036
]
114136585
03400 DNA repair and recombination proteins [BR:
xco03400
]
114136585
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
114136585
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
114136585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Psb28
Motif
Other DBs
NCBI-GeneID:
114136585
NCBI-ProteinID:
XP_027860437
LinkDB
All DBs
Position
21:complement(8225413..8254937)
Genome browser
AA seq
1955 aa
AA seq
DB search
MINVYNYLPKYQQGLKKTLKLGLDLDDFLRLVHREFGLPPWQNFCLVTTDRTVVDHVKFK
ELQDNSTLYLLQSEDQDLPVAAEEVINFVPHYNTLIESGTFEYFAEGQKSLPCSLAELVD
NSLSATAKNTGVRTIEIRLLFDKTFGKPAVVVLDNGCGMTSKQLNNWAVYRLSKFTRENS
AFESEREDYTRPDPVPRSLNSDISYFGVGGKQAAFHIGNSVRMISKPRNSPDVHELVLSK
DEFEKKEKNKEDVYQGTILNRKPGDFSHITHEECFLQDIIKEETRKESFTAVVITGVCHD
HINYLKDDFHEWTRQLAHIYHYYIHGVNGNHKMDQSQKSDVSPNIDIVVTLREKPPKGLR
QKNLKEVQDDLQTLYINSAVDTFEFKASTPDGGILDGILRYHPFLYDKETYPKDLNALQA
PVEEDDDENQSGTMNRARGKRDIFECFWNGRLIPYTTVSEFDWCRRPNKSTLPLECFSRF
SGVLFTNDKFRVNASKQKFMDLELKLRHKDNLFTPVFNIQKSSKNRNIQKEFIQWLEKCH
SQFDKQVKFLGYETTVKRLDVSIKKSQYPWAVFSTIELDGKIYKAGDLVKSQKTQPIYYG
KVNKFFLYGDHDGDVFATGGEVKITRVPEALYDNYTRIIPISKIDRSATIESIKKYIETD
IDKLPAKLGVTWPEGNPLPQNAIIPAGTPLGPLAVEILNRNEKSISSRINTGGQGGGIRL
NVGLRIFFHGPKEVKQPKEICYFSAQYVPTHGHWFKKNESLVNLGKYTLTLKAELSDNNS
KTSYGGKELPSYEHKFTVKEGNAENFTIGPLNPALRIGVPFSIPMQMTDSYGHPTKPPPN
LKPVLECSDLEVSFETMGTSGNSFTIKGVKIIGKVQNYQQSRNFDLKVTLPGLKKQTQTI
KINPFPGNPHSLLVKPEVKPVKVENGNPVSFTVEVHDEAGNITANSKQIVRCQISELKLA
VIDCSSTGTGQIVTEPINLKIVNGEPQMLQAKFDMPSQKHVVAITTELKVMPSCRVSRME
LFCEGEERLELKYKEKIQWQAGGMLENLLFKLYDESGQEVKVTPKIAFNIKVNWTGDIDQ
KALMMGRLPDIQVPTKVQEERFHQVSYRDHSVSFSFTIVPCPDEPARLKATVPENPVKLG
ETVTEPIKLQLVDRYDNVTNSLTSDCVRSMAVEAEGLDKSNIAFIWEESISSVAVSGICF
NSGPLGTREVCFSYGNYTEHINFKVTAGIPAKLKLLSGPEMPLQFLNGTGISTPFVVQLC
DEWGNPSPDQRVVVETRASPSTVKVTTSVTSQPVDAEGKAAFTVVNVKGLKGYYQLEFVG
CFNRKPIPGPHVNFNINPDPNKPVTLSVNYDTSARFLAGDTFPVFSVAVVSDAGSAMTAF
KSADLSMWYWRGESLPRPESAIMLKCSKPMENENKCCYYFRDKKIPQSVGTYTIQFSLRI
EKTEVLFSNQINVNVVANQPFKLGPECQPQTPVVSYSRDIANRTLVENMTLKIMDQYGNP
TGQNLKGKVLVSIKCPDGEQSRNLPLLEEVSTFQINLKDGSIHIKRLAIRENSPGENGRR
YILFFKPEVAMPPTSLSPFELPFHFYNDSENQRKVSELTKKKDELTVNYEKVNQKCSSLA
RLRELLTKNVLDANKKEETLKKVLEESGIPVLQLSSIQNIDSLLREKTAEKETIESTRRR
VFPLSNRSGPDILGKVGHLAHISDEDASWVISWHLSSEMDCVITKTTAEAQRIFRNEHGR
QQVMALDSIYVQPGSRPLPHIKQGRELFSPVGNPLYARNLLIYTTEEESCELVFKNILGN
TILMDDIESATNYRKAVIQNKNYCPTILTRDGNRLHSSGKFGGAQNKAPPRDIVKKFGAP
LPQSYYTLQKEIELLIQYRSTSEKKKDEEDKRNITIQKLCEIQQEMEKTKKELEEIERQL
ASVRSGKRGPKDISEPSGLMIKRPRQRSRDTPEGF
NT seq
5868 nt
NT seq
+upstream
nt +downstream
nt
atgattaatgtgtacaactacctacccaaataccagcagggtttgaagaaaactctgaaa
ctcggtttggaccttgacgactttcttcgacttgtacacagggaatttggtcttcctcca
tggcaaaacttttgtttggtaacaacagacagaacagttgttgatcatgtcaaatttaag
gagcttcaggataacagcaccctctacttgttgcaaagcgaggaccaagaccttccagtg
gcagctgaggaggtcatcaactttgttcctcattacaacacgctaatcgagagcggaaca
tttgaatactttgccgagggccagaaatcactgccctgctctcttgctgagctggtggac
aactctctttcggctacagctaagaacacaggagtcaggacgatagagatccggctgctt
tttgacaaaacatttgggaagcctgctgtcgtggtgttggacaatggatgcgggatgacc
tccaagcagctcaataactgggctgtttatagactctctaagttcacaagggaaaacagc
gcatttgaaagtgaaagagaagattacactcgtcccgatcctgtacctcgcagtctcaac
agtgatatatcctactttggagttgggggcaaacaagcagcgttccacattggaaactca
gtcagaatgatcagcaaaccaagaaactctccagatgttcatgagctggttctatcaaag
gacgaatttgagaaaaaagagaagaacaaagaggatgtttaccaagggaccatcttaaac
aggaagcctggtgacttctcgcacataacacacgaggagtgcttccttcaggacatcatc
aaggaggaaaccaggaaggaaagcttcactgctgttgttataacaggagtctgtcatgat
cacatcaactatctaaaagatgattttcacgagtggaccagacagctagcgcacatttat
cattattacattcatggagtcaatggaaaccacaaaatggaccagtctcaaaaatcagac
gtcagtccaaatattgatattgtggtaaccttgcgggagaaaccgcctaaaggtttgcgt
cagaagaatctcaaagaagtgcaggatgacttgcagaccctgtacataaactcagctgta
gacacatttgagttcaaggcctccactcccgacggtggcatcttggacggaatcctgaga
tatcatccatttctttacgacaaggagacctaccccaaagatctgaatgctctacaagca
cctgttgaggaagatgatgatgagaatcagtctggaaccatgaatcgggccagagggaag
agggatatctttgagtgtttctggaatggacgactcatcccttacaccacagtttctgag
ttcgattggtgccgtcggcccaataaaagtacattgcccctggagtgtttcagccgcttc
tctggggtgcttttcaccaacgacaaattccgggtcaatgccagcaaacagaagtttatg
gacttggagctgaaactgaggcacaaggataatctttttacccctgtttttaacattcag
aaatcctcaaaaaatcgaaacatccagaaagagttcatccagtggcttgaaaaatgtcac
agtcagtttgataagcaggtaaagttccttggctatgaaacgactgtgaaacgactcgat
gtgtccattaagaagtcgcagtatccctgggcggtgttctccactattgaattagatggc
aaaatatacaaagcaggggatcttgtgaaatctcagaaaactcagccgatttattacggc
aaagtgaataaatttttcctgtatggagatcatgacggagatgtgtttgccactggtgga
gaagtgaaaattactcgtgtgccagaggcgctttatgacaattacaccaggattataccc
atctccaagattgaccggtctgctacaatcgaaagcattaagaaatacatcgagaccgac
attgacaagttgccagcaaagctgggcgtcacatggcctgaagggaatcctttgccacaa
aatgctattattcctgctgggactcctttagggcccttagctgtggaaattcttaacaga
aatgagaaatcgatctcatccaggattaatacagggggtcaaggcggagggataagactg
aatgttggactcagaatattctttcatggtcccaaagaagtcaaacaacccaaagagatt
tgttatttcagtgcccaatatgtacctacccatggacactggttcaaaaaaaatgaatcc
ctggtcaatctggggaagtacactctgactctaaaagctgagttaagtgacaacaactcc
aagacgtcctatggcggcaaagagcttccgagctacgagcacaagttcacagtcaaagag
ggaaatgcagagaactttactattggtccactgaaccccgctctgcgcattggagtgccg
ttcagtattcccatgcagatgaccgattcttatggccaccccacaaaacctcctccaaat
ctcaagcctgttcttgaatgcagtgatctggaagtgagttttgagacaatgggcaccagt
gggaacagctttaccatcaaaggtgtcaaaatcatagggaaagtccagaattaccaacag
tccaggaactttgatctgaaagtgacactgccagggttgaaaaaacaaacacagactatc
aagatcaatccctttcctggcaatccacattcccttcttgtgaaaccggaagtaaaacca
gtgaaagtggaaaatggaaacccagttagttttactgtcgaagttcacgatgaggctgga
aacatcacagccaactctaaacagatagttcgctgccagatttcagagcttaagttggca
gtgatagactgcagcagcacaggaaccggccagattgtgacagagcctataaacctgaaa
attgtcaatggagagccacaaatgctgcaagctaaatttgacatgcctagtcagaaacat
gttgtagccatcacaacagagctgaaggtaatgccaagctgtcgcgtgtcccggatggag
cttttctgtgagggagaggaaaggctggagctgaagtacaaggaaaagatacagtggcaa
gctggagggatgctggaaaacctcctttttaagctctatgatgagtctggtcaggaggtg
aaggtcacacctaaaatagccttcaacatcaaggttaactggacaggagacattgatcag
aaggctttgatgatgggaaggctgccagacattcaggttcccacaaaagtccaggaagag
cgattccaccaggtctcctaccgggaccacagtgtgtctttcagctttaccattgtgcct
tgcccagatgaaccagcgcgactgaaggcaactgttcctgagaacccggtgaaactcggt
gaaactgtcactgaacccataaagttgcagcttgtggaccggtacgacaatgtcaccaat
agcctgacctctgactgtgtgaggtcaatggctgtggaagctgagggtctcgataaatcg
aacattgcattcatatgggaggagagcatcagttctgttgcagtctctggaatttgtttc
aactcggggcctctggggaccagagaagtttgcttcagctacggcaactacacagaacat
atcaactttaaagtgacggccggaatccccgccaagcttaaactcctcagtgggcctgag
atgcctttgcagtttttgaatggtacaggtatttccacgccattcgttgtgcagttgtgt
gatgagtggggaaacccttccccagaccagagagtggtggtggagacaagagcttcaccc
tcaacagtaaaggtgacgacatctgtcacttctcaacctgtggatgcagaaggaaaagca
gcttttacagttgttaatgtgaaagggttaaagggatactatcaacttgaatttgtaggg
tgctttaacaggaaacccatccctggtccacatgtgaacttcaatatcaaccctgatccc
aacaaacccgtcacactttctgtaaactacgacaccagtgccaggtttctagctggagac
acattccctgttttttctgtggccgtggtgtctgatgcagggagtgcgatgacagctttt
aagtctgccgatttgtccatgtggtattggaggggagagtcattgccacgtccagaatca
gccattatgctgaagtgcagtaaaccgatggagaatgagaacaaatgctgttattacttt
agagataaaaaaatcccacaaagtgttgggacgtacaccatacaattctccctgcggatt
gaaaaaacagaagtcttgttcagtaatcagatcaacgtaaatgtagtggccaatcaaccc
ttcaagctaggacctgaatgtcagccacaaaccccagttgtttcctacagcagagacatc
gccaaccgaactttagttgagaacatgactctgaagattatggatcagtatggtaatcca
actgggcagaacctgaaaggcaaggtgttggtctccataaagtgtcctgatggggagcaa
agcagaaacctccctctgcttgaagaggtcagcacttttcaaataaacctaaaagatgga
agcatccacatcaaaaggctggcgatcagggagaacagtcctggagagaacggacgaaga
tacattctctttttcaaaccagaagtggcgatgcctccaacatctctgagtccttttgaa
cttcccttccatttttacaacgactctgaaaaccaacgaaaagtgtctgaactgacgaag
aagaaggatgagctgaccgttaattatgagaaagtcaaccaaaaatgttcctcgcttgcc
agacttcgtgaattgcttactaaaaacgtcctggatgccaacaaaaaagaggaaaccctc
aaaaaagtgctggaagaaagcggaataccagttttacaactttcatctatccaaaatatt
gacagcttactccgagaaaagacagctgaaaaggaaacgatagagagtactcgcaggaga
gtgtttcctctgtctaaccgcagtggaccagatatccttgggaaggtgggccaccttgca
catattagcgatgaggacgcttcctgggtcatctcttggcacctgtcttcagaaatggac
tgcgtcatcaccaagacgacagcagaagctcagaggatcttccgtaacgaacatggcagg
cagcaggtcatggccctcgacagcatttatgtgcaaccaggaagcagacctctacctcac
ataaaacaaggccgtgaactgttcagtccagttgggaacccgctctacgcgaggaacttg
ctgatttataccactgaagaggagagctgtgagcttgtgtttaaaaatatcctcggtaac
actattctcatggatgacatagagtctgccaccaattacaggaaggcggttattcagaac
aagaactattgtcccaccatattgacccgggatgggaacaggctccactccagtggcaag
ttcgggggcgcacagaataaagcaccaccaagggacatagtgaagaagtttggagcccct
ttacctcaaagctattacacactgcagaaggagatagagttgctcattcaatatcgttca
acttcggagaagaaaaaagacgaggaagataagcgtaatattacgatacagaagctttgt
gaaattcaacaagaaatggagaaaactaagaaggagcttgaggagattgaaagacagctt
gcatcagtgagatcagggaaacgaggacctaaagacatttcagagccttctggcctcatg
ataaaacgcccaagacaaagatccagggatacgccagaggggttttag
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