Xiphophorus couchianus (Monterrey platyfish): 114142760
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Entry
114142760 CDS
T05908
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04010
MAPK signaling pathway
xco04120
Ubiquitin mediated proteolysis
xco04140
Autophagy - animal
xco04144
Endocytosis
xco04620
Toll-like receptor signaling pathway
xco04621
NOD-like receptor signaling pathway
xco04622
RIG-I-like receptor signaling pathway
xco05132
Salmonella infection
xco05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
114142760 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
114142760 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
114142760 (traf6)
04140 Autophagy - animal
114142760 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
114142760 (traf6)
04621 NOD-like receptor signaling pathway
114142760 (traf6)
04622 RIG-I-like receptor signaling pathway
114142760 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
114142760 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
114142760 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114142760 (traf6)
04121 Ubiquitin system [BR:
xco04121
]
114142760 (traf6)
Enzymes [BR:
xco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114142760 (traf6)
Membrane trafficking [BR:
xco04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
114142760 (traf6)
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
114142760 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
TRAF6_Z2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
TRAF3_RING
RING_XB3-XBAT31
zf-TRAF_2
zf-rbx1
U-box
zf-RING_11
BLI1
Motif
Other DBs
NCBI-GeneID:
114142760
NCBI-ProteinID:
XP_027870009
UniProt:
A0A3B5M5B0
LinkDB
All DBs
Position
4:5497024..5507010
Genome browser
AA seq
570 aa
AA seq
DB search
MACCESNKGSLEEDSYDGPVGSLSECALLMQEKERESLLSPSESPGTLMNSSSSSLQNTA
PLQGYDVEFDPPLESKYECPICLMALRNAIQTRCGHRFCKSCIEKSIRDAGQRCPVDNEM
LSEDQLFPDNFAKREILSLTVRCPNSGCTDKMELRHLENHLAVCQFATVPCPQCQQPIRK
GYLEEHKTVECQRRPMSCPDCVASFVFEDKELHEQQCPFASVRCQYCEMDLIRDQMESHC
DIDCPKAPIACNFSMFGCKERMQRHDLAQHMQEFTQMHMRYMAESLRGLSLNGTSPKPLR
TLGPSILAEDIGAAAPAAACSGLRGAVSCSISSAAPQPTDEMQRIREMDGRLVKQDHQLR
ELIILKETQAGQLAELRRRVSMLEETVKELEAQQCHGIFIWRLRGFSTLLRNQEAGMTVV
EHSPGFYTGRPGYKLCLRLHLQTPNAPRCSNFISLFVHTMQGTFDGQLTWPLQGTIRLAI
LDQGPDCQHHMEVMETKPDLQAFQKPVIARNPKGFGYVTFLHLQQLSQKAFLKDDTLLIR
CEVTPRFDSTFHREGPAVQPRGPEASISKE
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggcttgctgtgaaagcaataaggggagtttggaggaggacagctatgacggaccagtt
ggatcgctatctgaatgtgccttgttaatgcaggaaaaagaaagggaatcccttttaagc
ccatcggagagtcctggcactttaatgaacagctcatctagtagtcttcagaacactgcc
ccacttcagggttatgatgtggaatttgacccaccccttgagagtaagtatgagtgccca
atctgcctgatggccttaagaaatgccattcaaacacggtgtggtcaccgattctgcaag
agctgcattgagaagtctattcgtgatgcaggacagcggtgccctgtggacaatgaaatg
ctgtcagaagaccaactgtttcctgataattttgccaaaagagagattctatcgctaact
gttcgttgtccaaactctggctgcactgacaaaatggagctacgacatttagagaatcat
ttggctgtgtgtcagtttgccactgtgccttgtccgcagtgccagcagcctataagaaag
ggctacctagaggagcacaaaactgttgagtgccaaagaaggcccatgtcttgcccagac
tgtgtggcatcctttgtttttgaggataaagagctacatgagcagcagtgcccatttgca
agcgtgaggtgccagtactgtgagatggatctgatcagagaccagatggaatcccattgt
gatatagattgcccaaaagcccccattgcctgtaactttagcatgtttggctgtaaggag
aggatgcagcgacatgacctggctcagcacatgcaagagttcacacagatgcacatgcgt
tacatggcggagtccttgcgtggcctcagcctcaatggcacgtcacccaaacctctcaga
actctagggccgtccattttggccgaggatattggcgctgcagcaccagcggcagcctgc
agcgggctcagaggagctgtgagctgcagcatcagctccgccgcaccccagcccactgat
gagatgcagaggatcagagagatggatgggcgattggtgaagcaggatcaccagctgcgt
gagctcatcatactgaaagagacacaagcagggcagcttgcagagctgcgtcgtagggtc
tcaatgctggaggaaaccgtgaaggagctggaggcccagcaatgccacggcatcttcatc
tggcgcctcagaggtttctctaccctcctgcgcaaccaagaagcaggcatgacagtggtc
gagcacagccctggcttctacacaggccgtccaggctacaagttgtgtctgcgcttacac
ctgcagacgcccaacgccccacgctgctccaacttcatctcccttttcgtccacactatg
caaggaacttttgacgggcagctgacttggcctcttcaaggaacgatccggcttgccatc
ttagaccagggacctgactgtcagcatcacatggaggtcatggagacaaagccagacctg
caagccttccagaaacccgtgattgcacgcaatcccaaaggatttggctacgtcactttt
ttgcatctgcaacagctgagtcagaaagcttttttgaaagatgacactctgctgatccgc
tgcgaggtgacgccacgctttgatagcacttttcatcgggagggcccagccgtgcagcca
agaggacctgaagcatcgatttcaaaagaataa
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