Xiphophorus couchianus (Monterrey platyfish): 114151962
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Entry
114151962 CDS
T05908
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03440
Homologous recombination
xco03460
Fanconi anemia pathway
xco04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
114151962 (brca1)
09124 Replication and repair
03440 Homologous recombination
114151962 (brca1)
03460 Fanconi anemia pathway
114151962 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xco01009
]
114151962 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xco04121
]
114151962 (brca1)
03036 Chromosome and associated proteins [BR:
xco03036
]
114151962 (brca1)
03400 DNA repair and recombination proteins [BR:
xco03400
]
114151962 (brca1)
Enzymes [BR:
xco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114151962 (brca1)
Protein phosphatases and associated proteins [BR:
xco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
114151962 (brca1)
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
114151962 (brca1)
Multi subunit Ring-finger type E3
BRCC complex
114151962 (brca1)
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
114151962 (brca1)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
114151962 (brca1)
BRCA1-A complex
114151962 (brca1)
BRCA1-B complex
114151962 (brca1)
BRCA1-C complex
114151962 (brca1)
BRCA complex
114151962 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
114151962 (brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-Nse
zf-RING_5
RTT107_BRCT_5
zf-ANAPC11
zf-MIZ
zf-rbx1
zf-RING_4
TRAF3_RING
PTCB-BRCT
Sina_RING
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
114151962
NCBI-ProteinID:
XP_027885332
LinkDB
All DBs
Position
10:2231564..2260110
Genome browser
AA seq
1378 aa
AA seq
DB search
MSCGKTEADKLYVDAYKLSENKPFKITMTTPKATDVKKGISVLWETLQCPICLDLMSAPI
STKCDHQFCKFCITKLLDNSKQNRANCPVCKFKITKRSLQESPGFQRLVAGLQEMIQAYE
HDTCTNYFTGLPQQRKNTKNTETSKDACDLSFGDPSGIEQSNKGTEHRNDSPQSCSSTVA
AQNGFAQLMGLEDSASVTAENEGLDSGLGDVPPTSDKKMSDNLEPETANVGKNATDASKI
KRLKRKPEKASNCLDSTQEEPGQQNVRKSSRKKQKNDLEHNKILEQKKKKSLEKVAEWLL
KVPAEEELELEKPLHSEDDSDSSSSSLILDVEPQNVELNPKRKHRGKAIEEQVFGVIYKR
RGSKVTEPLTAREIETCKRFSKLKKKNNVRLCEERQTVENDTGSDFFKELEQMAVEEKVE
ETVEKLNQKVSDKYKGEHEVPVADFIQPETTAPTRRTCKSLQQPESDLQEQTQLKPKCTD
KKSDCRKEKNSKLSRKKPTKVAKPLVLVEVQDRETSPKPSERVKEVEVRIETYPSSEEQT
TPVMKSARKSRRLQLFVDEVHGSHKKKTNKVTATKTDKVAKKQSDETMDATPSKSGNLMK
EAKRNRCVTEEDIGVIENVEKRGRMSLSQAEAEVPEAQTLAKPECTVSVVPNSTSPTDPS
IVGPPLESEKQENNRPPGSQQETFANVEEYEDGKNDSELDTEQLLQSFKASKRKSFLLGD
PNAKRSRGLDVENAERSQHNCSSAELSENINQVSKSNCSDVISPSNSPSKIRKPDQALLD
ASNPDGNCPSRSNVGSGLSPNKVAKCDRDSPLSVVPQVVDSGLRFIAVEQEAAKASQGNY
NLTEIPDGISKCPSDNKTETIFVGESSLTLDQEVKEANGSGEVSTQSSIQTNQKKKRKTQ
RLESSSESSSSSKEELPTLAQIFGTSDRPQAEIKHQGEIGEANRLEGVGEEPLGRPAGSL
TPDQLDSSQASVDLFGTPEECDAPENCVGVCFESSQFSSEVLVTQQKIEMQKELVRLEKL
MALVSEVLQGKEGSPAAETNQGCENKGPELDEQDQVQSSDRTDILDAETKAPDDKVAERG
GFSGTTVQDLTHAESTVKDTKTPNSISATKTAKTCDSPPDCQEDKENNSPPKEKFKAKLI
LVSSGLGPNEQIMVKKFAKRVGGRVVSRVTPEVTHIVMRTDDQLVCERTLKYFLGIAGRK
WVVSFQWISECFKEKKLLKESSFEVRGDVVNGPNHQGPLRARTAGDSNLLMKGYKICFQG
TFPDMSTDEMEWMVELCGATVVKDPLVLDGEQKSHQIVIVQPRSDSLLSSCYSGEYFLKT
KPRFHLHVDSARIVTPSCITPTHFQHLTTRQERQQWLHNSRFNPRLSRNKCKRLYFKT
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgagttgcgggaaaactgaagcggataagctttatgttgacgcctacaaactgtcagaa
aacaagccttttaaaatcactatgacgaccccaaaagccaccgatgtcaaaaagggaatc
tcagtcctctgggagactcttcaatgtcccatttgcctggatttaatgtctgcaccgatt
tctactaaatgtgatcaccagttttgcaaattttgtattacgaagcttttggacaactcg
aaacaaaacagagccaactgcccagtgtgtaaattcaagataacaaaaaggagcctgcag
gagagccctgggtttcagaggcttgttgcaggacttcaggagatgatacaagcatatgaa
catgacacctgcacaaactactttactggactgccacagcaaagaaagaacactaaaaat
acagaaacaagtaaagatgcatgtgatttatcatttggagacccatctggaattgaacag
agcaataagggaactgaacaccgaaatgattctccacagtcctgctcctcaactgtagca
gctcagaatgggtttgctcagcttatgggacttgaagactctgcatctgtaacagcagaa
aacgaaggcctggatagcggcctgggtgacgtcccaccaacatctgacaagaaaatgtca
gataacttggaaccagaaactgcaaatgttggaaaaaatgcaacggatgcgtctaaaatc
aaaaggctgaagcgcaaaccggagaaggcctctaactgtttagattcaactcaagaggaa
cctggtcaacagaatgtccgaaagtcctctagaaagaaacagaaaaatgatttggagcac
aacaagattcttgagcagaaaaagaagaaaagtttggagaaagtcgctgagtggctcctc
aaagttccagccgaagaagagctggaactagagaaacccctccacagcgaagacgattcg
gatagcagttcgtcttcgttgatcctggacgttgagccgcaaaacgttgaattgaatcct
aagagaaaacatcgtggcaaagccattgaagagcaggtttttggcgtcatctacaagcga
agaggaagcaaagttaccgagccgctaacggctagagaaatagaaacttgtaaaagattt
tcaaaactgaagaagaaaaacaatgtccgcctttgtgaagagcgacaaacagtagaaaat
gacactggcagtgacttttttaaagaattggaacagatggcggttgaggaaaaggttgag
gaaactgtggagaagttgaaccagaaagtaagcgacaaatataagggggaacacgaggtt
cctgttgctgatttcatacaaccggaaactacagcaccaacgagaaggacttgcaaaagt
ctgcaacaacctgagagtgatttacaagagcagactcagttgaaaccaaaatgtaccgac
aagaaaagtgattgtcggaaagaaaaaaattcaaagttaagcagaaagaaaccaactaag
gtggcaaaacctcttgtgttagtcgaagttcaggacagggaaacgagtcctaaacccagt
gaaagagttaaagaagtcgaagttcgaatagagacttatcccagcagcgaggaacagaca
actccagtcatgaagagcgccagaaaaagcagaaggcttcagctttttgttgacgaggtt
catggaagtcacaagaaaaaaaccaataaagttactgcaactaaaacagacaaagtcgct
aaaaagcaatctgatgaaacaatggatgcaactccatctaaaagtggaaaccttatgaag
gaagctaaaagaaacagatgtgttactgaggaggatatcggagtgatagaaaatgtagaa
aagagaggaagaatgtctttgtcacaagctgaagcagaggtacccgaagcacaaacgcta
gctaaacctgaatgtactgtctctgtggtcccgaactccacaagtccaactgatccatcc
atcgtaggcccgccgcttgaaagtgagaagcaggagaataatcgcccacctggctctcag
caggagacatttgctaacgttgaagagtacgaggatggcaagaacgacagtgaactggac
acagagcaacttctccaaagcttcaaagcttccaaacggaaatctttccttcttggggac
cccaacgcgaagagaagtcgcggtttggatgtggaaaacgctgaaaggagccaacataac
tgttcaagcgctgaactatcagaaaatataaaccaggtttcaaaatcgaattgtagtgac
gtgatttccccttccaactcgcccagtaagattagaaaaccagatcaagctctactggac
gcttccaatcctgatggaaactgtccatccaggagcaacgtcggcagcggtctcagtcca
aacaaagtggcaaagtgtgacagagacagtcctctgtctgtcgtccctcaggtcgtggac
tctggcctccgcttcatagctgttgaacaggaagcagcaaaggcttcccagggcaactac
aacctgactgagatcccagacggcatttcaaaatgtccttcggataacaaaaccgagaca
atttttgttggagagtcttctttaaccctggaccaagaggtcaaggaagccaacggcagc
ggagaagtcagcactcaatcctccatccagaccaaccagaagaagaagaggaagactcag
aggctggagtcttcatccgagtccagcagctcatctaaagaggagttaccgactttggcg
cagatctttggaacatcagatcgtcctcaagctgagattaaacatcagggagaaatcggc
gaagctaacagattggagggagttggtgaagaaccactgggtcgtccagctggaagtctg
accccagatcagctcgactccagccaggcatccgtcgacttgttcggcacaccggaggaa
tgtgacgcccctgaaaactgcgtcggcgtttgctttgaatcgtcacaattctcaagcgaa
gttcttgttactcagcaaaagatagaaatgcagaaggagctggtgaggctggagaagctg
atggctctcgtgtcagaggtgcttcaggggaaagaaggcagtcctgctgcagaaaccaat
cagggctgtgaaaacaagggtccagaactggatgagcaggatcaagtccagagttcagac
aggacggatattttagatgcagaaaccaaagcacctgatgataaagtggcagagcgtggt
ggcttttcaggaaccactgttcaagacttgactcatgcagaatcgactgtaaaagacaca
aaaacccctaattcaatttctgcaaccaaaactgcgaaaacttgtgattcacctccagat
tgccaagaagacaaagaaaacaacagccctccgaaagaaaaatttaaagctaaacttatt
ctggtgtcgtccggattgggcccgaatgagcagataatggtgaaaaagtttgccaagaga
gtcggcggtcgcgtcgtttcccgggtcacaccagaggttacgcatatcgtaatgcgcaca
gatgatcagctggtctgcgaacgcacactgaaatacttccttggcattgcgggtcggaaa
tgggtcgtcagcttccagtggatttctgaatgcttcaaggaaaagaaactgttgaaagag
agttcgtttgaagtgagaggcgatgtggtgaacggaccgaaccaccaggggccattaaga
gcccgcaccgcaggagacagtaatctgctcatgaagggatacaagatctgcttccagggg
acgtttccagacatgtcaacagatgagatggagtggatggtggagctgtgtggcgctact
gtagttaaagacccacttgtccttgacggcgaacagaagtcccaccagatcgttattgtt
cagcccagatccgactcattgttgtcgtcctgctacagcggtgagtattttctgaaaact
aaacctcgttttcacctccatgtcgactcggcccggatcgtcacaccttcctgcataact
ccgacacatttccagcatttaacgacgcgacaggagcgtcagcagtggttacataattca
aggttcaatccgaggttatccagaaataaatgtaaaagactttattttaaaacgtga
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integrated database retrieval system
