Xiphophorus couchianus (Monterrey platyfish): 114152852
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Entry
114152852 CDS
T05908
Name
(RefSeq) E3 ubiquitin-protein ligase TTC3-like isoform X1
KO
K15712
E3 ubiquitin-protein ligase TTC3 [EC:
2.3.2.27
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xco04121
]
114152852
Enzymes [BR:
xco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114152852
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
114152852
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TTC3
TTC3_DZIP3_dom
wHTH_TTC3
TTC3_9th
zf-RING_2
zf-rbx1
TPR_2
zf-C3HC4
zf-C3HC4_2
TPR_1
TPR_16
TPR_17
zf-C3HC4_3
zf-RING_5
zf-RING_UBOX
zf-RING_11
TPR_14
TPR_11
TPR_19
TPR_12
zf-HC5HC2H
TPR_9
Motif
Other DBs
NCBI-GeneID:
114152852
NCBI-ProteinID:
XP_027886741
LinkDB
All DBs
Position
11:7806866..7853749
Genome browser
AA seq
1711 aa
AA seq
DB search
MPDLSKMSDSDSDSDWGFHRNRKFLKSHGDIKINLSERVFSQWGSIPLQTKKEGAQRMRV
CVFWFPTLLQPDISKTFTWAAEVGLINEETSEMLDVENLRRIQVVEMILLHLEVASLDRD
SSRHVFIFCNMLHQHCSPEILEEAVRWLETLGDGFRREQLLCLGGFPNCYTTFGFIFSEY
AKFMREMSNNLDATMRALKAPPDESSAMESEAMKILGNEKFQAQQYAEALKFYTNAIKCY
PDNHILYGNRALCYIKQKEYLKAAGDGKRAVLIDPLWAKGHYRYCEALFCLGAMDLALEA
NSTARWLCRENPEGLRDLDQQFLKFRPEPPPGTDPTPFYQLGAELPQRPHSFKVGLVKKI
PQPTKTGGKNNPTRSLAAKVIKTKTDKKTAPSDPEGRLKDPKTSRSERDDFSGSKIKSKS
QSETQKANQNQKMADSKADLCKELRFLVHEAHSALLDLRSRNAEQAFSQALGLLEAAPPK
RLGLSSLDVLLLLFGRASALIEIGQPEELAEAEKLLERMKSFEERTFQCLVYYTIGRVFL
RENRFKVAVQQFSDSLQMVKNQITPGKLTWPLTKEIVKETQADSFKEMLEKSIELCRFPP
APDAVCRLEKCLCPLKAEIYFTDPDFKGYIQICCCQSCKVEFHISCWKSLKSTEFREKNE
KDVLNEACLTPDCLGKICSIRIFGPTGLVKCKFETTITKPELPKKPRVNQKATSVKKLKS
KEDQKQKRKQFKQTFKDQKTNSHEILQKKDDSGSPSQQKAWLVYRDRVLLQINQNLDLLR
EEQGLQVSALVSGLRPWLELDWARGNCLAGRLLHWQQEQLQTLGQAVELLLERKNRVWAR
VFIQQLSGCVGINAKLSKWACQLDGAGLTAAQTFIERHSECLEQLDLVVLLNFDPLKQMI
LEKLDTKPDLFWRLGLTVTEYLKQASAHDVRLFIWTLEEHRHDYVCCHSILDEYFDMMDA
HCSVLKKSENDHISPTRTKSRGRKKKRKGVFGLPPTRALTPRDEWDQDLFEEDSLSFLHP
GDPFSVPSHLREQVADFEDQYRTAYTKFLDNHPDSTKESLYEYFAQILEEHGPLVDEDRL
LVGELANFPAEARRKIAEAGGLESFLLESLRFIKIGRRIGLTRHAVGPRLAASLDDLDVI
GDPRLNEASPDPYMLGDFSDYLSGFCFPVAGAQPVLPNPYSFYPAGSDAAPAWSDIDCVF
IANGYAEPHLDALDDIYEQLERDPAPQRSVLSSKASRCCSDAAVQTSAGAVGSVAVNTER
HEHWEAQQGDIIRQQRSNRKLEQQILKTQNGNKVDQSEQDDVRLMEKEVKEITTNIQVTH
KELLMFQQKLEEEVKKDQKEKKSNQEELKALKTEVEHLVEEQASFSRSIREKKSSYEAKL
NDFLELSNQSAAEKMSLEDEIRRHQALLTSAGRRSYMAQLSAAESSRDQSLNILHRELAD
AKTLLSKLDEAAHRTQNQELESARNGCKAEVEEVEKNISTAERRFQDLLDQLRGRRVGDS
AAAPIGPVLQLPVAANDPPPQPARAASPPTTESAPPAAPPRAAARKEPLLVSVFQKAMDS
LTAMFPDYSRSGLMRFVQDFRLARGGSLNLVPLQEVVSGVAQLILDHQETLKSSGAAGRS
SPAQGNQNPVWQLVGAQRVRNPNALNMEDPCIICHEDMSPEDACVLECRHSYHDQCIRSW
LKENNTCPTCRTHALLPDDFPALSTRRRQAP
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgccagacttgagcaaaatgtcggattcagactcggacagcgattggggtttccaccgc
aacaggaagtttctgaaatctcacggggacatcaaaataaacctttcagagagagtgttc
agccagtggggctccatccccctacagaccaagaaggaaggcgctcagcggatgagagtt
tgcgtcttctggtttcccacgctgctgcagcccgacatctccaagaccttcacttgggcc
gcagaagttggcttaatcaacgaagagacaagtgaaatgctggatgtggagaacctccgc
aggattcaggtggttgaaatgattctgctgcacctggaagtggcaagtttggacagggat
tcctccagacacgttttcattttttgcaacatgttgcatcagcactgctctccagagatc
ctggaggaagcggtgcgctggctggagacgctgggcgatgggttcagacgggagcagctg
ctctgcctgggaggattccccaactgctacacaacattcggcttcatcttctcggagtat
gccaagtttatgcgggagatgagcaacaacctggacgctacgatgagggccctgaaggca
ccgcctgatgagtcgtctgcaatggaaagtgaagcgatgaagatccttgggaacgagaag
tttcaggcccagcagtacgcagaagctctgaagttttacaccaacgccatcaaatgctat
cctgataatcacatcctgtatgggaacagagcgctgtgctacatcaagcagaaggaatat
ctaaaagcagcaggagatggaaaacgtgccgttctgatcgacccgctctgggcgaagggc
cactaccggtattgcgaggcgctgttctgtctcggggccatggacctggcattggaggcc
aacagcaccgcccggtggctgtgcagagaaaacccggagggactcagagatctggaccag
cagttcctgaagttcaggccggagccgccgcctggtaccgatccaactcctttctatcag
ctgggagctgagctgccgcagaggcctcacagctttaaggtcgggctggtgaagaaaatc
cctcagccgacaaaaacaggcggtaaaaacaatccgaccaggagtttagctgcgaaggtc
atcaagacgaaaacggacaaaaagacagcgccgtccgacccggagggacgactcaaagac
cctaaaacgtccagaagtgagcgcgacgacttcagcggctctaagatcaagtcaaagagc
caaagtgaaacgcagaaagcgaaccagaaccagaagatggccgacagcaaagcagattta
tgtaaggagctgcggtttctggtgcatgaggctcacagcgcactgttggacctgcgcagc
cgcaacgcagagcaggccttcagccaggcgctggggctgctggaggccgccccgcccaag
agactgggactttcctctctggatgttctgctgctgctgttcggtcgagcgtcggccttg
atagaaatcggacagccggaggaactagcagaagcagagaaactcctggagaggatgaaa
tcgtttgaagagcgaacgttccaatgtctggtttattacaccatcggcagagtgtttcta
cgagaaaaccggtttaaagttgccgtgcagcaattttcagattcgctgcagatggtgaag
aatcaaattacgccaggtaaactcacctggccgttaaccaaagagattgttaaagaaacc
caagcagacagtttcaaggagatgcttgagaaatcgatagagttgtgtagatttcccccc
gcccctgacgccgtctgtcgtcttgaaaaatgtctttgccctctaaaagctgagatctat
ttcactgacccagattttaagggctacattcagatatgctgctgtcagagctgcaaggtt
gaatttcacatcagctgctggaagagcctaaagtctacagagttcagggaaaagaatgaa
aaggatgtcctgaatgaggcgtgtttgactcccgactgtctgggtaaaatctgctctata
cgaatctttggtcctacgggtttggtgaaatgtaagtttgaaacgacgatcacgaaaccg
gagttgccgaagaaacctcgagttaatcagaaagccaccagtgtgaagaagttaaagtcc
aaagaggatcagaagcagaagaggaaacagttcaaacagacgtttaaggatcagaaaacc
aacagccatgaaatcctgcagaagaaagacgactcgggatcgccgagtcagcagaaagcc
tggttggtgtacagagaccgggttctgctgcagatcaaccagaacctggacctgctgcgg
gaggagcagggcctgcaggtgtcggcgctggtcagcggcctgcggccctggctggagctg
gactgggcccgggggaactgcctggccggccgcctgctccactggcagcaggagcagctg
cagacgctgggccaggccgtggagctgctgctggagcgcaagaaccgggtctgggcccgg
gtcttcatccagcagctcagcggctgcgtgggaataaacgccaagctgagcaagtgggcg
tgtcagctggacggcgcagggctgaccgcggcgcagaccttcatcgagcggcactctgag
tgcctggagcagctggacctggtggtgctgctgaactttgaccccttaaaacaaatgatt
ttagagaaactggacactaaaccggatttgttttggcgcctcggcctgacggtgacggag
tatctaaaacaggcctcggcgcacgacgtccggctttttatctggactctggaggagcat
agacacgactacgtttgttgtcacagtatactggatgaatattttgatatgatggatgct
cattgttctgtgttaaaaaagtctgaaaatgatcatatttctcctactcgaactaaaagt
cgaggccggaaaaagaaacgaaagggtgttttcggtttgcctccgacccgagcgctaacg
cccagagacgagtgggaccaggacctttttgaagaagactctttatcgttccttcaccca
ggtgacccgtttagcgttcccagccaccttagagagcaggtggctgattttgaggaccaa
tacagaacggcctatacaaagtttttagacaaccaccccgactccaccaaagaaagtttg
tatgagtattttgcccagatcctggaggagcacggcccgctggtggacgaggaccgcctg
ctggtgggcgaactcgccaacttccctgctgaggctcggaggaagatcgcggaggcgggc
ggcctggagagcttcctgttggagtcgctgcgctttattaagatcgggcggcgcatcggc
ctgacccggcacgccgtcggcccgcggctcgccgccagcctggacgacctagacgtcatc
ggcgacccgcggctcaacgaggcgtcgcctgacccgtacatgctgggcgacttctccgac
tacctgtccgggttctgcttccccgttgccggtgcgcagccggtcctgcccaacccgtac
tccttctacccggcaggaagtgacgctgcgcccgcctggtcagacatcgactgcgtcttc
attgccaacggttacgccgagcctcacctggacgcgctggacgatatttatgagcaattg
gaaagagatccggctcctcagaggagcgttttgtcctcgaaggcgagtcgttgctgtagc
gacgcggcagttcagacgagtgcgggcgccgtgggcagcgtggcggtgaacacagagcgg
cacgaacactgggaggcgcagcagggtgacatcatcaggcagcagcggagcaacaggaag
ttggagcagcaaatactgaaaacccaaaacggcaacaaagtggaccagagcgagcaagac
gacgtccggctgatggagaaggaggtgaaagaaatcaccacgaatatccaggtgacccat
aaggagctgctgatgttccagcagaagctggaggaggaggtgaagaaggaccagaaggag
aagaaatccaaccaggaggagctgaaggcgctgaagacggaggtggagcacctggtggag
gagcaggccagcttttcgaggagcatcagagagaagaagagcagctatgaggccaaactc
aacgacttcctggagctcagcaaccagtcagcggctgagaagatgagtttggaggatgag
atcaggcgccaccaggctctgctgacctctgctggcaggaggtcctacatggctcagctg
tcggcggctgaaagcagcagggatcagagtctgaacatcctgcacagagagttagccgat
gccaagacgctgctcagcaagctggacgaggcggcgcacagaactcagaaccaggagctg
gaatcagcgaggaatggctgcaaagctgaagtggaggaagtagagaagaacatttccacc
gctgagcgccgcttccaggaccttctggaccagctgaggggccgccgggtcggagacagt
gcggccgctccgatcggaccggttctgcagcttcctgtcgcagccaacgatcctccgcct
cagccggcccgcgccgcctccccacccaccacagagtccgccccgcccgccgctccgccc
cgagccgccgccaggaaggagccgctgcttgtctcggttttccagaaggccatggacagc
ctgaccgccatgtttccagactattccaggtccggcttgatgcgtttcgttcaggacttc
cgtctggccagaggaggaagtctgaacctggtgccgctacaggaagtggtcagcggcgtg
gcgcagctcatcctggaccatcaggaaacgctgaagtcatccggcgccgcgggccggtcc
agcccggctcaggggaaccagaacccggtgtggcagctggttggagcgcagagagtccga
aacccgaacgccctgaacatggaggatccctgcatcatctgccacgaggacatgagtcca
gaggacgcctgcgtgctggagtgtcggcacagctaccacgaccagtgcatccggtcctgg
ctgaaggagaacaacacctgtcccacctgcaggacccatgcgctgctgcctgacgacttc
cccgctctgtccaccaggaggcgccaggccccctga
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integrated database retrieval system
