Xiphophorus couchianus (Monterrey platyfish): 114157888
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Entry
114157888 CDS
T05908
Name
(RefSeq) short transient receptor potential channel 5-like
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xco01009
]
114157888
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xco04040
]
114157888
Protein phosphatases and associated proteins [BR:
xco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
114157888
Ion channels [BR:
xco04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
114157888
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_5
Ank_4
PKD_channel
YVC1_C
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
114157888
NCBI-ProteinID:
XP_027894859
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Position
14:complement(21136726..21256514)
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AA seq
1093 aa
AA seq
DB search
MNPMTQLYYKKATYSPYRDRIPLQIVRAEVELSAEERAYLTAVEKGDYAGVKHALREAEV
YYNMDVNCLDPLGRSALLIAIENENLEIMELLLDHGIHTGDALLYAIRKEVVGAVELLLS
HRRPSGEKQVPSLMMDSQFSEFTPDITPIMLAAHTNNYEIIKLLVQRKVTIPRPHQIRCD
CVECVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFRLGWELKELSKVENEF
RQEYEELSQQCKRFAKDLLDQARSSRELETILNHRDNDQSEELDPRQCHDLAKLKLAIKY
HQKEFVAQPNCQQLLATLWYDGFPGWRRRHWAVKLVTCFIIGLLFPVFSLIYLLAPKSAL
GRFIKKPFIKFICHTASYLTFLFLLLLASQHIARTNLHMQGPPPTIVEWMILPWVLGFIW
AEIKEMWDGGFTEYIHDWWNLMDFAMNSLYLATISLKIVAYVKYNSSRPREEWEMWHPTL
IAEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLN
QLYFYYETKASEEPNNCKGIRCERQNNAFSTLFETLQSLFWSIFGLLNLYVTNVKARHEF
TEFVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGT
LPPPFNIIPSPKSFWYLLMWLHNKLCRTGQPPGEASHKCENLREFTERHADSLIQNQHYQ
EVIRNLVKRYVAAMIRSAKTDEGLTEENFKELKQDISSFRYEVLDLLGNRRPPRRHYSSS
SETTKDDGAMASEDDSESGDGPGEGGGGGGVGVQKSKSVTFSNPVEDDRRPAPTLGVSAL
VRSISGMTRIDKAEEGRLEDRVGWGEEEEEEEGKPKSNGLKTAVMPPSSTNVLPSPSSSF
SSSLSSSLSRTRSRLQRLSSPSAKTDSFKRLSYLLSRSKRKAPPTPLPLQSPPSYTISDG
LLRPLRSHSHSDFGLSDVTRSDTHLNEVGRSVDMPSFSPLRTNGRDSLLTLPLPPPCPCQ
SLHCASNMSESSSRLLDSSEDIFQGEGIEGAGEEGMDGGGGGGMMMMGGWVGPCDDVLED
SCDVIEDSVTTQL
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaatgacacagctgtactacaaaaaggcgacctattcgccgtaccgcgaccgc
atcccgcttcagatcgtccgagctgaagtggagctgtcagctgaggagcgggcctacctc
accgctgtggagaaaggtgactatgccggggtcaaacacgccctgcgcgaggccgaggtt
tactacaacatggatgtgaactgtctggacccgctgggccgcagcgcgctgctcatcgcc
atcgagaacgagaacctggagatcatggagctcctgctggaccacggcatccacacgggc
gacgccctgctgtacgccatcaggaaggaggtggtgggcgccgtggagctgctgctgtca
cacaggaggccgagcggcgagaagcaggttccctccctgatgatggacagccagttctca
gagttcacccctgacataactcccatcatgctcgctgctcacaccaacaactacgagatc
atcaagctgcttgtccagcgcaaagtcaccatcccaaggccacaccagatacgatgcgac
tgcgttgagtgtgtttccagttcagaggtcgacagccttcgacattctcggtctcgactc
aacatctacaaggcgctggcgtcaccgtctctcatcgcgctgtccagtgaggatcccatc
ctcactgccttcagactgggctgggaactcaaagagctgagcaaggtggagaacgagttt
cgccaggagtacgaggagctttcccagcagtgcaaacgattcgccaaggacctcctggat
caggccagaagttcccgcgagctggagaccatcctgaaccacagagacaacgaccagagc
gaggagctggaccccaggcagtgccacgacttggccaagctcaagctcgccatcaagtac
caccagaaggagtttgtagcgcagccaaactgccagcagctgctagccactctttggtac
gacggtttcccgggctggaggagacgacactgggccgtcaaactggtgacctgcttcatc
atcggactgctgttcccagtcttctcactgatctacctgttggccccaaagagcgctctg
gggcgcttcatcaagaaacccttcatcaagttcatctgccacaccgcgtcctacctgacc
ttcctcttcctcctgctgctggcgtcgcagcacatcgcccgcaccaacctgcacatgcag
ggacccccacccaccattgtggagtggatgatccttccctgggtgctgggttttatctgg
gcagagatcaaggagatgtgggatgggggattcacagagtacatccatgactggtggaac
ctaatggactttgccatgaactccctctacctggccaccatttctctgaagatagtggct
tacgtcaagtacaactcctctcgtccaagggaggagtgggagatgtggcacccgacgctg
atcgccgaggctctgttcgccatcgccaacatcttcagctcgctcagactcatctccctc
ttcacagccaactcccacctcggccctctgcagatctctctggggaggatgctgctggac
atcctcaagtttctcttcatttactgtctggttctgttagcgtttgctaatggactcaac
cagctgtatttctactacgaaaccaaggcttcagaagaaccaaacaactgcaaggggatc
cgctgtgaaaggcagaataacgccttctccacgttatttgagactctccagtcgctcttc
tggtccatatttgggctgctcaacctttacgtcaccaacgtgaaagctcggcacgagttc
accgagttcgtcggggcgacgatgttcgggacatataacgtcatctctctggtggttctg
ctgaacatgctcatcgccatgatgaacaactcctaccaactcatcgctgaccacgccgac
attgagtggaagtttgcccgcaccaagctgtggatgagctacttcgatgagggcggcacg
ctgccccctcccttcaacatcatccccagcccaaagtccttctggtacctcctgatgtgg
ctccacaacaagctgtgcaggacaggccagccgcccggagaggcctcgcacaaatgcgaa
aaccttcgagagttcactgagcgccatgctgacagtctgatacagaaccagcattaccag
gaagtgattcgaaatctggtgaagagatacgtggctgccatgatacgaagcgccaaaacg
gatgaagggctgacggaggaaaacttcaaggagttgaagcaggatatctccagtttccgc
tatgaagtcttggatctcctcggcaaccggcgtcctccccggcgacactattcttcatcc
agcgagacgacaaaagacgatggtgccatggcgtcagaggatgacagcgaatcaggtgat
ggccctggagaaggagggggaggaggaggcgttggagtccagaagtcgaagagcgtcacc
ttctccaacccggtggaggacgacagaaggccagcgccgacgctcggcgtgtctgcgctg
gtgcgctccatttcaggaatgacgcggatagacaaagcagaggagggaagactggaggac
agagtggggtggggagaagaggaggaggaagaggaggggaaaccaaaaagcaacgggcta
aagacggctgtcatgcctccgtcctccaccaatgtcctcccctcgccatcgtcgtcattt
tcctcttcgttatcatcatcgctttctcgcacaaggagccgcctgcagcgcctctcgtcc
ccaagcgcaaagacagactctttcaaacgcctctcctacctgttgtcccgctccaaacgc
aaagccccgcccacgccgctgcctctccagtccccgccctcgtacaccatctccgacggg
ctgctccgccccctcaggagccacagtcactccgacttcggactcagcgacgtcaccaga
agcgacactcacctgaacgaggtgggtcgctcggtggacatgccgtcattctcgccgctg
agaacgaatgggcgggactcgctcctgacgcttcccctcccgccgccgtgcccctgccaa
tccctgcactgtgcttccaacatgtctgagtccagctcgcgactgctggactccagcgag
gacattttccagggagagggcatagaaggggcaggcgaagaaggcatggacggaggaggc
ggagggggaatgatgatgatgggggggtgggtgggaccatgtgacgatgtcttagaggac
agctgcgatgtcatagaggactctgttaccacgcagctatag
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