Xiphophorus couchianus (Monterrey platyfish): 114159493
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Entry
114159493 CDS
T05908
Name
(RefSeq) sodium channel protein type 4 subunit alpha B-like
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xco04040
]
114159493
Ion channels [BR:
xco04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
114159493
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
HORMA
IQ
Motif
Other DBs
NCBI-GeneID:
114159493
NCBI-ProteinID:
XP_027897258
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All DBs
Position
16:2629066..2648982
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AA seq
1655 aa
AA seq
DB search
MVPLLPPVGTEVFRCFTPASLEKIQRKDEAEAKEQQIRKDKNIKIAKKYLPKPAGDLEDG
KPLPLFYEDQAQEFLNIPLEDMDPFYQSHKTFIVLSKGKTIYRFNAEPTCYLLSPFNFLR
IFSIRILIHSLFSFFIMATILTDCVFMTMSNPPAWSKTVEYVVMVIYTFEVIIKVLSRGF
CVGDFTYLRNPWNWLEFMVINMIYLAEFVHFGNVSALRPFRVLRILKIITVFSGLRTIFG
AVIQSVKKLRDAMLLTFFFLSVFALIGLQLFMGDLRQKCVFTLSSDSNTSGAFNISSYEN
NGSDFDFYEYINNPENHYYPPVQLDALLCGNSSDAGTCPDGYMCLKAGRNPNYDYTSYDS
FSWAFLSLFRLMTQDFWENLFHMTLRAAGKTYIIFFVVVIFLGSFYLINLILAVVVMAYA
EQNRANIVKAKQREKEYARILKELKKREEKVQCDGEKASITFQYKTEYLFSLHQTVQRAT
PLEKNGSASHEEDATRDDLEDNQKPRSSRWYVFADTFLKWDCCGCCRWLKKLLHTTVMDP
FVDVAITMCIVLYTILMATEHYYMTEKLLQLIEIGNLVITGILTAEMVLKILAMDPYHYF
QEGWNIFDSIIVTMSLVELGLAYVYSVVWRPLRLIRVFKLAMSWPAFKVLIKIIRNSLRA
LGNLMLVLAIIVFIFTVFGMQLFEKSYKDCVCRIAQDCELPRWHMSDFFHAFLVIFRILC
GEWIETMWDCMQVAGKPMCLIVYMMVLVIGKLVVLNLFIALLLSSFSGDNLAVTEDEGEN
NLQIVINRISRGTARTKAWFWTLVGKKTNVNSDVNDVICEEGDKSKEVLPLTIVNSEQSV
VKVQDPKVTKICSEAKSDSEISKNKNDEDNEEDDQDEQLAQGDKSLDCSDIERFPVISIV
KEAEDTPDDCFTEKCYSCCPCLDIDTSKSIGRIWLYIRKTCITIVESKYFKSFIITVILL
SSAALAFEDIYIEQRQDIKIILEYADQVFNFVFVVEIILKLGAYGCKTFFSSAWCWLDFL
IADVSLVLLSASILGYSELGAIKSLRTLRALRPLRVLSCFEGLRVMVNELVGAIPSIFNV
LLICLVLWLIFSIMGVNLFAGKFFYCFNETSEEYFSPEEVNNKSQCLDLFEKGFSEVRWK
ISKINFDSVVMGCLSLLQVSTFKGWLDIMYSAVDSREVEAQPMYESNLYMYMYFVCFIIF
GSFFPFCLFITSLINFNQCKPKPIEIEPPIKWIPREPPSRPTNKFQGLVFDLVTNPFFDI
LIMVLICLYTLAMMVETDEQSPEKEEILYWVNLVFIMIFSIECCLKIIALRKHYCYDGWN
IFELVVVILCIVGFVVADIIEKYFVSPTLFRVIRLARIGLILRLIRRAKGIRKLLFALGK
SLPAVFNLCILLFIIMFVFSIFGMSNFAYVKKDSMIDDMINFETFGNSMISMFTITTLAG
WDGLLSPILNTPPDCDPDFENPGTSVRGNCASPAAGIVFFTLYVIVSFLVVVNIHITIIL
EIFNAAAEESTNKLSEYDIDMFYKTWEKFDPQASQFIHYSELSDLYDALPYPLRIPKPNT
INLLQMDLPLVQGDRVHCLDVLLALTEEVFGESQATEELKSTVEWKFMANIASEESLRPI
VSTFRKKHEEMAATAIQRAYRRHVQQRVNKQESYQ
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atggtccctctgctaccccctgttggtacggaggtgtttagatgcttcacaccagcctca
ctggagaaaattcagcgaaaggatgaagctgaagcaaaggagcagcaaatcagaaaggat
aagaacatcaagatagcaaagaagtatcttcctaaaccagcaggtgatctggaggatggg
aagcccctcccgttgttttatgaagaccaggcccaggagtttctcaacatcccattggag
gacatggaccccttctaccaatcacacaagacctttatcgttctcagtaaaggaaaaacc
atctacaggttcaacgccgaaccaacttgttacctgctgagtcccttcaactttctgagg
atcttctccatcaggatcctcatccattctttattcagttttttcatcatggcgacaatc
ctgactgactgtgtgttcatgaccatgagtaaccctccagcatggagcaagacagtggaa
tatgttgtcatggtgatctacacgtttgaggtaatcatcaaagttttatccagagggttc
tgtgtgggagacttcacctacctcagaaacccgtggaactggctggagttcatggtcatc
aacatgatatacctagcagagtttgtccactttggaaatgtatcagcactgaggccattc
agagttcttcgaatcctgaaaatcatcacagtattctctggtttaaggacaatctttggc
gctgtcatccagtcagtgaagaagctgcgtgatgccatgcttctgaccttcttttttctc
agtgtttttgctctgattggtttacagctttttatgggagacctcagacaaaaatgcgtt
tttaccctgtcaagcgacagcaacacatcaggagctttcaacatcagttcctacgaaaac
aacggcagtgacttcgatttttacgagtacattaacaacccagaaaatcactactaccca
cctgttcaacttgatgccctgctgtgtggaaacagctctgatgcagggacctgtccagat
ggatacatgtgtctgaaggcagggagaaacccaaactatgactataccagctacgacagt
ttcagctgggcgtttctgtctctgttcagactcatgactcaggacttctgggaaaatctc
ttccacatgacgctgcgagctgcaggtaaaacctacatcatcttcttcgtggtcgtcatc
ttccttggttccttctacctcattaatctcatcctggcggtggttgtcatggcgtacgct
gagcaaaacagggccaacatcgtcaaggccaaacagagagaaaaagagtatgcccgcatc
cttaaggagttaaagaagagagaagagaaggtacaatgtgatggagagaaagcttccatc
acttttcagtacaaaactgaatatttgttttctttacatcagacggtccagagggcaacg
cccttggagaaaaacggctccgcatcacatgaggaagatgctaccagggatgacctagag
gacaaccagaagccacgttcttcacgctggtacgtctttgctgacaccttcctgaagtgg
gactgttgtggctgttgcagatggttgaaaaagcttctgcatactactgtcatggatcca
tttgtggacgtcgccatcaccatgtgcattgtcctctacactatcttgatggccactgag
cactattatatgactgagaagcttctacagcttatcgaaattggaaacctggtgattaca
gggatcttaacagctgagatggttctcaaaattctggcgatggatccatatcattacttt
caggaaggctggaatatctttgatagcatcatcgtcaccatgagtctggtggagctagga
ctggcttatgtttatagtgttgtgtggcggcccctcagattgataagagtgtttaagcta
gccatgtcgtggccggctttcaaggtgttgataaagattatccgcaactctttgagagcc
ctggggaacttgatgctggttctcgccatcattgtcttcatcttcactgtatttgggatg
cagttgtttgaaaagagctacaaagactgtgtctgccgcattgcccaggactgtgagctt
cctcgctggcacatgagcgacttttttcatgccttcctcgtcatcttcaggattctgtgt
ggcgagtggattgagacaatgtgggactgtatgcaagttgcagggaagcctatgtgtctg
attgtctacatgatggtactggtgattggaaaactagtggtcctgaatctgttcatagcc
ttgctgctaagctcattcagtggggataatcttgcagttacagaagatgaaggagaaaat
aatctccagattgtgataaaccggatcagcaggggtacagcaaggactaaggcctggttc
tggactttggtgggaaagaaaacaaacgtaaactcagatgtaaatgatgtaatctgtgaa
gaaggtgacaagtcaaaggaagttttacctctgacaattgtgaattcagagcagtcggtg
gtaaaagtccaagaccccaaagtaaccaaaatctgctctgaagccaagtctgactctgag
atatctaaaaataaaaatgatgaagataatgaggaggatgaccaagatgaacagcttgca
caaggtgataagtctttggactgcagcgacatcgagagatttcctgtaatctccatagta
aaagaggcagaagacactcctgatgattgtttcacagaaaagtgttacagttgctgtcca
tgcctggatatagacacatccaagagcataggaaggatctggttatatatcaggaaaact
tgcatcaccatcgtagagtccaagtactttaagtcattcatcatcaccgtgatcctgctg
agcagtgcagccctggcctttgaggacatctacattgagcagcgccaggacatcaagata
attctggaatatgcagatcaggttttcaactttgtgtttgtggtggagataattctcaag
ttgggtgcctacggatgtaaaaccttcttctccagtgcctggtgctggttggatttcctc
attgcagatgtttctctggtgttactgtcagcaagcatcctgggatactctgagctggga
gctatcaaatctctgaggactctgagagcattgagacccctaagagtcttgtcttgcttt
gagggcttgagggtgatggttaatgaattggttggagccatcccctccatcttcaacgtg
ctgctaatctgtctggtcctctggctcatctttagcatcatgggtgtgaacctgtttgca
gggaagtttttttactgcttcaacgaaacatcagaggagtatttctctcctgaggaagtc
aacaataaatcccagtgtctcgatttgtttgagaagggcttctccgaggttcgctggaag
atctcaaagatcaactttgacagcgttgtgatgggctgcctgtctctgctgcaagtgtcc
acatttaaaggctggctggacatcatgtattcagcggtggactccagagaggtggaggcc
cagccaatgtatgagagcaacctgtacatgtacatgtactttgtctgcttcatcatcttt
ggctccttctttcctttctgcctcttcatcacctcactcatcaacttcaaccagtgtaaa
ccaaagcctatagaaatagaacccccgataaaatggatccccagagaacctccttcccga
ccgacaaacaagtttcagggtctagtcttcgaccttgtgaccaatccattttttgacatt
ctcatcatggtgttgatctgcctttatacgttggcgatgatggtggaaacagacgagcag
agtcctgagaaggaagaaatcctgtactgggtcaacctcgttttcatcatgatcttcagc
atagagtgctgtctcaaaattatcgctctacgaaagcactactgttatgatgggtggaac
atatttgaacttgtggtggttatactgtgtattgttggttttgttgttgctgatatcatc
gagaagtacttcgtttctcccactctcttccgtgtgatccgactggctcgcattggcctg
atccttcgtctcattcgcagagctaagggaattagaaagctgttgtttgcattaggaaag
tctcttccagctgtattcaacctatgcatcctcctcttcatcatcatgtttgtcttctcc
atctttgggatgtctaattttgcttacgtgaagaaggacagcatgattgatgacatgatt
aactttgaaacctttgggaacagtatgatctccatgtttacgatcaccacattagctgga
tgggacggtcttctctctcccatcttgaacacacctccagactgtgatccagactttgaa
aacccaggcacatctgtcaggggcaactgtgccagccctgcagcaggtattgtcttcttt
actttgtatgtcattgtgtcctttctggtggtggtcaatatacacatcaccatcatcctg
gagatatttaacgccgccgcagaggagagtaccaacaaactatctgagtatgacattgac
atgttctataaaacctgggagaagtttgacccacaagcttcgcaatttattcactacagt
gagctgtcggatctctatgatgctctaccgtatcctctcaggattcccaaacccaacacc
atcaacctgttacaaatggacctgcctttggttcaaggagacagggtccactgtctggac
gtcctgctagctctcactgaagaggtttttggtgaatctcaggcaacggaggaactaaag
tctaccgtggagtggaagttcatggccaacattgcttcagaggagagtttaagaccaatc
gtcagcacctttcgaaagaaacacgaggagatggcagcgacagcgatccagagagcctac
aggagacacgttcagcagcgagtgaacaagcaggagtcctaccagtaa
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