Xanthomonas campestris pv. raphani: XCR_0887
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Entry
XCR_0887 CDS
T01872
Name
(GenBank) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
xcp
Xanthomonas campestris pv. raphani
Pathway
xcp00300
Lysine biosynthesis
xcp00550
Peptidoglycan biosynthesis
xcp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
XCR_0887
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
XCR_0887
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
xcp01011
]
XCR_0887
Enzymes [BR:
xcp01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
XCR_0887
Peptidoglycan biosynthesis and degradation proteins [BR:
xcp01011
]
Precursor biosynthesis
Amino acid ligase
XCR_0887
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
Motif
Other DBs
NCBI-ProteinID:
AEL05804
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Position
926052..927539
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AA seq
495 aa
AA seq
DB search
MSRTMALSQLLPDVALARDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFAAQALASGA
SAILFEPPAPADLPVPADAIAVPGLRARLGVLADHFHGAPSQTMRMIGVTGTNGKTSTVQ
LLAQALTLLGTPTGTIGTLGVGLYGAVVPTGFTTPLVLQTHAELAQLRDAGAQAVAMEVS
SHALDQGRVDAVQFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLRTAVVNLDDAF
GRTLFAALDPALRAIGVSSRAQAGATVQAQDLQLDHHGIQCVLHIGAAAHPVRSPLLGRF
NVDNLLAVAGALYALDIAPAQIAEVLGRLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALE
QALTSLRSHAQDRLICVFGCGGERDTGKRPQMAAIAEVTADVAIVTDDNPRGEDGDVIVA
DILRGFARPDAAIVQRDRAAAIHQAISMAGADDIVLIAGKGHEPYQEVAGVRHAFDDAAV
AAQALLPRTGLGVRV
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
gtgagccgcaccatggcactgtcgcagttgctcccggacgtggcgcttgcacgcgatgtg
caggtgtccggcctggtgatggacagccgtgccgtgcgcccgggcgatgccttcgtggcc
atcgccggcttcggtgcgcatgggctgggatttgccgcacaggcgctggccagcggtgca
tctgccatcctgttcgaaccgccggcgccggccgacctgccggtgcctgccgacgcgatc
gccgtgccggggttgcgcgcgcgcctgggcgtgctggccgaccacttccacggtgcgccg
tcgcagacgatgcgcatgattggtgtcaccggcaccaacggcaaaacctccacggtgcag
ctgctggcgcaggcgctgacgctgctcggcacccccaccggcaccattggcacgctgggc
gtgggcctgtacggcgctgtggtaccgaccgggttcaccacgccgctggtgttgcagacc
cacgccgagctcgcgcaactgcgcgatgccggcgcgcaggcggtggcgatggaagtcagt
tcgcatgcactcgatcagggccgcgtggatgcggtgcagttcgacgtggcggtgttcacc
aatctcacccgcgaccatctcgattatcacggcgacatggcgcagtacggtgcggccaag
gccaagctgttcgcacgcgccgggttgcgcacggcggtcgtgaacctggacgacgccttc
ggccgcacgttgtttgcggcgctggatccggcactgcgcgccatcggcgtgagctcgcgt
gcgcaggccggtgccacggtgcaggcgcaggatttgcagctcgatcaccacggcatccaa
tgcgtgttgcacatcggcgctgcggcgcacccggtgcgctcgccgctgctgggccgtttc
aacgtggataacctgctggccgtggccggcgcgctgtacgcgctcgacatcgcaccggcg
cagatcgccgaagtgctgggccgcttgcagccgatccacggccgcatgaatcgcctgggt
ggtgcgcatggcgcgccgctggtggtggtggactacgcacacacgcctgacgcactggaa
caggcgctcaccagcctgcgttcgcatgcgcaggatcggttgatctgcgtgttcggttgc
ggcggcgaacgcgacaccggcaagcgcccacagatggccgccatcgccgaggtcaccgcc
gatgtggcgatcgtcaccgacgacaacccgcgcggcgaagatggcgatgtgatcgttgcc
gacatcctgcgcgggtttgcgcgtccggatgcggcgatcgtgcagcgcgaccgtgcggcc
gccatccaccaggccatcagcatggccggcgcggacgacatcgtgctgatcgccggcaag
ggccatgagccgtatcaggaagtggccggcgtgcggcatgcattcgacgatgcagcagtg
gctgcgcaggcgttgctgccgcgcaccgggctgggggtgcgcgtatga
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