Xanthomonas campestris pv. raphani: XCR_1806
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Entry
XCR_1806 CDS
T01872
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
xcp
Xanthomonas campestris pv. raphani
Pathway
xcp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
XCR_1806 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xcp03400
]
XCR_1806 (nth)
Enzymes [BR:
xcp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
XCR_1806 (nth)
DNA repair and recombination proteins [BR:
xcp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
XCR_1806 (nth)
Prokaryotic type
XCR_1806 (nth)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
DprA_N
Motif
Other DBs
NCBI-ProteinID:
AEL06702
UniProt:
G0C9H5
LinkDB
All DBs
Position
complement(1842912..1843595)
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AA seq
227 aa
AA seq
DB search
MSSALPASPPRRGSTLRKPEIQELFARLRELNPHPTTELEYTTPFELLIAVLLSAQATDV
GVNKATRKLYPVANTPRDILDLGEEGLKRYISTIGLFNAKAKNVIATCRILLERYGGEVP
HDRAALEALPGVGRKTANVVLNTAFGEPTMAVDTHIFRVANRTGLAPGKDVRVVEDKLVK
VIPAEYLHDAHHWLILHGRYVCKARKPDCPNCVIHDLCRYRDKTVAA
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgcacttcccgcatcgcccccccgtcgcggtagcaccctgcgcaagccggag
atacaggagctgtttgcgcggctgcgcgaactcaacccgcatcccaccaccgagctggaa
tacaccacgccgttcgaactgctgattgcggtgctgttgtccgcacaggcgaccgacgtg
ggcgtcaacaaggccacgcgcaagctgtacccggttgccaatacgccacgcgacatcctg
gacctgggcgaagaaggcctgaagcgctacatctcgacgattggattgttcaacgccaag
gccaagaacgtcatcgccacctgccgcatcctgctggagcgttacggcggcgaggtgccg
cacgatcgggctgcgctcgaggcgctccctggcgtgggccgcaagaccgccaacgtggtg
ctcaacaccgcgttcggcgaacccaccatggccgtggacacccacatctttcgcgtcgcc
aaccgcaccggcctggcacccggcaaggacgtgcgcgtggtcgaagacaaattggtcaag
gtgattccggccgaatatctgcacgacgcccaccactggctgatcctgcacgggcgctac
gtctgcaaggcacgcaaaccggattgcccgaattgcgtgatccacgatctatgccgctac
cgcgacaagacggtggctgcctga
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