Xanthomonas campestris pv. raphani: XCR_1849
Help
Entry
XCR_1849 CDS
T01872
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xcp
Xanthomonas campestris pv. raphani
Pathway
xcp03030
DNA replication
xcp03410
Base excision repair
xcp03420
Nucleotide excision repair
xcp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XCR_1849 (ligA)
03410 Base excision repair
XCR_1849 (ligA)
03420 Nucleotide excision repair
XCR_1849 (ligA)
03430 Mismatch repair
XCR_1849 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xcp03032
]
XCR_1849 (ligA)
03400 DNA repair and recombination proteins [BR:
xcp03400
]
XCR_1849 (ligA)
Enzymes [BR:
xcp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
XCR_1849 (ligA)
DNA replication proteins [BR:
xcp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XCR_1849 (ligA)
DNA repair and recombination proteins [BR:
xcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
XCR_1849 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XCR_1849 (ligA)
MMR (mismatch excision repair)
DNA ligase
XCR_1849 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XCR_1849 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AEL06745
LinkDB
All DBs
Position
1880865..1883366
Genome browser
AA seq
833 aa
AA seq
DB search
MTASPDPAQRIDALRQRIEDANYRYHVLDELQIADVEYDRLLRELETLEAAHPELATADS
PTQRVGYLAASRFAEVRHALPMLSLGNAFSDEEVAEFVRRISERLERKQPVFCAEPKLDG
LAISLRYELGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGTGWPKVLEVRGEVYMPR
AAFEAYNAQMRLQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVAEGALPPT
HSAMLAQLREWGFPVSQLVEVVQGSEGLLTYYRRIGEARDGLPFDIDGVVYKLDDLAGQR
EMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVVVTNATL
HNADQIARLDVRVGDTVIVRRAGDVIPEVAGVVAEQRPAGTHAWQMPTQCPVCGSEIVRE
EGQAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGVVQGVADLYLLN
VDQLLQLRLISTADSPHAFLREAREHLAAGAYAQVEQTLVGISVDLAGVQPAPQAWQADL
LRAGLPAFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKALSAWFG
ELEVIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAIDDLLQRGVRIGDAHPPSPKL
RGSLSFAVLLEDLDIPKVTPVRAQQLAAATASFDALIASEADPLLQAGVPAPVIASLQQW
LARPENTALATAAQRAMDALLAQLPQADAVQAGPLDRQTVVITGTLAALTRDAAKQRLES
LGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLSEHGQAI
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgactgccagcccggatcccgcacagcgcatcgatgccctgcgtcagcgcatcgaagac
gccaactaccgctatcacgtgctcgacgagctgcagatcgccgatgtcgagtacgaccgg
ctgctgcgcgagctggagacactggaagcggcgcatccggaactcgccactgccgattcg
ccgacccagcgcgtgggctacctggccgcgtcgcggtttgctgaagtccggcatgcgctg
ccgatgttgtcgctgggcaatgccttcagcgacgaggaagtggccgaattcgtgcgccgc
atcagcgaacggctggagcgcaagcagccggtgttttgcgccgaacccaagctcgacggc
ctggccatcagcctgcgctacgaacttggcgaattcgtgcagggcgccacccgcggcgat
ggcgccactggcgaggatgtgagcgccaatctgcgcaccgtcaaggccattccgctgcgc
ctgcgtggcacgggctggcccaaggtgctggaggtgcgtggcgaggtctacatgccgcgt
gccgcgttcgaggcctacaacgcgcagatgcgcctgcagggcggcaaggtgctggccaat
ccgcgcaatggtgcggccggttcgttgcgccagctcgatgcacgcatcaccgcgcaacgg
ccgttgagtttttttgcctacggcgtgggcgaggtcgcggaaggtgcgttgccgcccacc
cactcggcgatgctggcccaactgcgcgaatggggattcccggtcagccagctggtagag
gtggtgcagggcagcgagggcttgctgacgtactaccgacgcatcggtgaagcacgcgac
ggcctgccattcgatatcgatggcgtggtgtacaagctggacgatctggccggccagcgc
gagatgggctttgtgtcgcgcgcaccgcgctgggcgctggcgcacaagttcccggcccag
gagcaatccaccacggtggaggcgatcgaaatccagatcggccgcaccggtgcggcaacg
ccggtggcacgcttgaagccggtgcacgtggccggcgtggtggtgaccaacgcgaccttg
cacaacgcagaccagatcgcgcgcctggatgtgcgcgtgggcgacacggtgatcgtgcga
cgcgccggcgatgtgattccggaggtggccggtgtggtcgccgagcagcgccctgccggc
acccacgcttggcagatgccgacccaatgcccggtgtgcggctcggagatcgtgcgcgaa
gaaggtcaggcggtgtggcgttgttccggcgagctcacgtgcccggcgcagcgcaaggaa
gccttccgccattttgtgtcgcgccgcgcgatggacgtggacgggctgggtgaaaaattc
attgaagtgctggtcgatagcggcgtggtgcagggtgtggccgacctgtatctgctcaat
gtcgaccagctgctgcagctgcgtttgatcagcaccgccgacagcccgcatgcgttcttg
cgtgaagcacgcgagcacctggctgccggtgcgtatgcgcaggtcgagcagaccttggtc
ggcatcagtgtggatctcgccggcgtgcagccggcgccgcaggcctggcaggccgatctg
ttgcgcgcgggcttgccggcgttcgactggaaccgcaagaaaatcgccaccaagtgggcc
gaaaacctgatagaggcgatcgagacctcgcgcgacaccacgctggagcgcttcctgttt
gcgctgggcatcgagcatgtgggcgagagcaccgccaaggcgttgtcggcgtggtttggg
gagctggaggtaatccgccatctgccctggccgctgttcaagcgcgtgccggacatcggc
ggtgaagtggcgcgctcgctcgggcatttcttcgaccaggccggcaaccagcaggcgatc
gatgacctgctgcagcgtggcgtgcgcatcggcgatgcgcatccgccttcgcccaagctg
cgcggctcgctgagttttgcggtgctgctcgaagatctggatattcccaaggtcaccccg
gtgcgtgcgcagcaactggccgctgcaaccgcctccttcgatgcgttgatcgcctccgag
gccgacccgttgctgcaagccggtgtgccggcgccggtgatcgcctcgctgcagcagtgg
ttggcgcgcccggaaaatacggcgctggcaacggccgcgcaacgcgctatggacgcgttg
ctggcgcaattgccgcaggccgatgcggtgcaggccgggccgctggaccgccagaccgtg
gtcatcaccggcacgctggccgcgctgacgcgcgatgccgccaagcagcgcctggaatcg
ctgggcgccaaggtagccggtagcgtctccaaaaaaaccgcgttcctggtggcgggcgaa
gaagccggctccaagctggacaaggcgcagagcctgggcgtggagatctgggacgaagcg
cggctgctggcattcctgagtgagcacggtcaagcgatatga
DBGET
integrated database retrieval system
