Xanthomonas cerealis: KHA79_11050
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Entry
KHA79_11050 CDS
T10673
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xcs Xanthomonas cerealis
Pathway
xcs03030
DNA replication
xcs03410
Base excision repair
xcs03420
Nucleotide excision repair
xcs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xcs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KHA79_11050 (ligA)
03410 Base excision repair
KHA79_11050 (ligA)
03420 Nucleotide excision repair
KHA79_11050 (ligA)
03430 Mismatch repair
KHA79_11050 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xcs03032
]
KHA79_11050 (ligA)
03400 DNA repair and recombination proteins [BR:
xcs03400
]
KHA79_11050 (ligA)
Enzymes [BR:
xcs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KHA79_11050 (ligA)
DNA replication proteins [BR:
xcs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KHA79_11050 (ligA)
DNA repair and recombination proteins [BR:
xcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KHA79_11050 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KHA79_11050 (ligA)
MMR (mismatch excision repair)
DNA ligase
KHA79_11050 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KHA79_11050 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
DUF7340
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UKE45728
LinkDB
All DBs
Position
complement(2516065..2518581)
Genome browser
AA seq
838 aa
AA seq
DB search
MTASSDLQQRVAELRQRIEDANDRYYVHDDPSITDAEYDALMRELEALEAEHPQLARDDS
PTRTVGARPDGGFSEVRHAMPMLSLANAFEMPGVAEDADDRERFAEVADFERRIERALDL
VAPVFSVEPKLDGLAISLRYEDGVFVQGATRGDGSTGEDVTANLRQVRSVPLKLRDLGTP
FPAVLEVRGEIYMPRAAFAAWNARALERNEKLLANPRNGAAGSLRQLDPAVTRRRPLAFF
AYSVGEVRGLELPETHSQTLALLRRYGFPVAPEAATATGFDGLIAYFRRIGARRDTLPYD
IDGVVYKLDDYDQQAAMGFVSRAPRWALAHKFPAQEQSTVLRAIEVQIGRTGAVTPVARL
EPVQVAGVTVTNATLHNADQIARLDVREGDTVIVRRAGDVIPEVVRVIEERRPAGTLPWT
MPATCPVCGSHIVREEDAVAWRCSGGLACAAQRKEAVRHFASRRAMDIEGLGDRQADALV
EFGFVHSLADLYALSVEDLVRMKAALDAATAADLVQAVNDSKGALTLGAQAQPLLAQESP
DWKRADFLRAHLAVELGGKLATKWAENLVAGIAASRNTTLPRFLFALGIPHLGETTAKAL
AHWLGSLRFVRSTPAVLLQALPDIGGEVARSIATFFEQRGNAAVVDALVKAGIRFADEGA
PPAELRERLDLAHLLTTLPVDKLGGKSAQRLAATYGTLDTLLRANESGWTGAGLSAAGAA
NLAAYLADDANVQALRQANAAMRRLLDAAPAQAERRAAPLDGQTVVLTGTLQHLSRDAAK
ARLEALGAKVAGSVSKKTSFVVAGAEAGSKLDKAQALGVAVWDEETLLALLGEHEGQG
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcttcatccgatctccagcagcgcgtcgccgagctgcgccagcgcatcgaagac
gccaacgaccgctactacgtgcacgacgatccgtcgatcaccgatgccgagtacgatgcg
ctgatgcgcgagctggaggcattggaagccgagcacccgcagttggcgcgcgacgactcg
ccgacccgcacggtcggcgcgcggcccgacggcggcttctcggaagtgcgccatgcgatg
ccgatgctgtcgctggccaacgcgttcgagatgccgggcgtggccgaggatgccgacgac
cgcgaacgcttcgccgaagtcgccgatttcgagcgccgcatcgagcgcgcgctggacctg
gtcgcgccggtgttctcggtcgagccgaagctggacggcctggcgatcagcctgcgctac
gaggacggcgtgttcgtgcagggcgccacccgcggcgacggcagcaccggcgaggatgtc
accgccaacctgcgccaggtgcgctcggtgccgctgaagctgcgtgatctgggcacgccg
tttccggccgtgctcgaagtgcgtggcgagatctacatgccgcgcgcggctttcgctgcc
tggaacgccagggcgctggaacgcaacgagaagctgctcgccaacccgcgcaacggtgcc
gccggttcgctgcgccagctcgatccggcggtcacccggcggcggccgctggcgttcttc
gcctattcggtcggcgaagtgcgcggcctggaactgcccgagacccattcgcagaccctg
gccctgctgcgccgctatggtttcccggtagcgcccgaggctgcgacggcgaccggcttc
gacggcctgatcgcgtatttccgccgtatcggcgccaggcgcgacacgctgccgtacgac
atcgacggcgtggtctacaagctcgacgactacgaccagcaggcggcgatgggcttcgtc
tcgcgcgcgccgcgctgggcgctggcgcacaagttcccggcgcaggagcagtccaccgtg
ctgcgcgcgatcgaagtgcagatcggccgcaccggcgcggtcaccccggtggcgcggctg
gaaccggtgcaggtcgccggcgtcaccgtcaccaacgcgaccttgcacaacgccgaccag
atcgcgcggttggacgtgcgcgagggcgacaccgtgatcgtgcgccgcgctggcgatgtg
attcccgaggtggtgcgggtcatcgaagagcgccgtcccgccggcacgctgccgtggacg
atgccggccacgtgtccggtgtgcggttcgcacatcgtgcgcgaagaggacgcggtggcc
tggcgctgcagcggcggcctggcctgcgcggcgcagcgcaaggaggccgtgcgccacttc
gcctcgcgccgggccatggacatcgagggcctgggcgatcgccaggccgatgccctggtc
gagttcggtttcgtgcattcgctggccgatctgtacgcactgagcgtcgaggacctggtg
cgaatgaaagcggcgctggacgcggcgaccgccgccgacctagtgcaggccgtgaacgac
agcaagggcgcgctgacgctcggtgcccaagcgcagccgctgctggcgcaggaatcaccg
gactggaagcgcgccgacttcctgcgcgcgcacctggccgtggagctgggcggcaagctg
gcgacgaaatgggccgagaacctggtcgccggcatcgccgccagccgcaacaccacattg
ccgcggttcctgttcgcactcggcattccgcacctgggcgagaccactgccaaggcgctg
gcgcattggctggggtcactgcggttcgtacgcagcacgccggcggtgctgctgcaggcg
ctgcccgatatcggcggcgaggtcgcgcgttcgatcgcgacctttttcgagcaacgcgga
aacgcggctgtggtcgatgcgctggtcaaggccggcatccgcttcgccgacgaaggggcg
ccgccagcggaactgcgcgaacgcctcgacctggcgcacctgttgaccacgctgccggtg
gacaagctcggcggcaagagcgcgcaacggctcgccgcgacctacggcacgctcgatacg
ttactgcgcgccaacgaaagcggctggaccggtgccgggctgtcggcggccggcgcggcc
aacctggccgcctatctggccgatgacgcgaacgtgcaggccttgcgccaggccaatgcg
gcgatgcggcgcctgctcgacgcggcgccggcgcaggccgagcgccgcgccgcgccgctg
gacggacagaccgtggtgctgaccgggacgttgcagcacctcagccgcgacgcggccaag
gcgcggttggaggcgctgggcgcgaaggtcgccggcagcgtgtcgaagaagaccagcttc
gtcgttgccggcgccgaggccggttccaagctggacaaggcgcaggcgctgggtgttgcg
gtgtgggacgaagagacgttgctagccttgctcggcgagcacgaggggcagggatga
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