Xanthomonas euvesicatoria pv. vesicatoria: XCV1668
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Entry
XCV1668 CDS
T00288
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xcv
Xanthomonas euvesicatoria pv. vesicatoria
Pathway
xcv03030
DNA replication
xcv03410
Base excision repair
xcv03420
Nucleotide excision repair
xcv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xcv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XCV1668 (ligA)
03410 Base excision repair
XCV1668 (ligA)
03420 Nucleotide excision repair
XCV1668 (ligA)
03430 Mismatch repair
XCV1668 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xcv03032
]
XCV1668 (ligA)
03400 DNA repair and recombination proteins [BR:
xcv03400
]
XCV1668 (ligA)
Enzymes [BR:
xcv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
XCV1668 (ligA)
DNA replication proteins [BR:
xcv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XCV1668 (ligA)
DNA repair and recombination proteins [BR:
xcv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
XCV1668 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XCV1668 (ligA)
MMR (mismatch excision repair)
DNA ligase
XCV1668 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XCV1668 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
DUF4796_N
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
CAJ23345
UniProt:
Q3BV14
LinkDB
All DBs
Position
1877321..1879822
Genome browser
AA seq
833 aa
AA seq
DB search
MTASPDPAQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADS
PTQRVGHLAASRFAEVRHALPMLSLGNAFSEEEVTEFVRRISERLEVKQPLFSAEPKLDG
LAISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRGEVYMPR
AAFEAYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQT
HSAILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLDDLAGQR
EMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATL
HNADQIARLDVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSQIVRE
EGQAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVKGVADLYLLS
VDQLLQLRLISTAESPHAFLREAREHLASGAYAQLETSVVGIGVDLAGERDVPQTWQADL
LRAGLPRFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKALSAWFG
DLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAIDDLLQRGVRIGDTHPPSPKL
REALSFASVLEDMDIPKVTPVRAQQLAASVDSFAALRTAGADALQQAGVPAPVVAALLQW
LDRPENTALANAAQQAMETVLARLPQADALQTGPLDGQTVVITGTLAALTRDAAKQRLEA
LGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWGEARLLAFLGDHGQQP
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgactgccagcccggatcccgctcagcgcatcgatgccctgcgccgtcgcatcgaagac
gccaactaccggtatcacgtgctcgacgagccgcagatggccgacgccgattacgacaag
ttgatgcgcgagctggaggccttggagcgcgcgcacccggaattggccagtgccgattcg
ccaacccagcgcgtcggccatctggccgcctcgcgatttgccgaagtgcggcatgccttg
ccgatgctgtcgttgggcaatgcgttcagcgaggaggaagtgaccgagttcgtgcggcgc
atcagcgagcggctggaggtcaagcaaccgctgttttcggccgaacccaagctcgatggc
ctggcgatcagcctgcgctacgagaatggcgagttcgtgcagggcgccacgcgcggcgat
ggcgccaccggcgaggatgtcagcgccaacctgcgcaccgtcaaggcgattccattgcgg
ctgcgcggcgagggctggccgcaggtgctggaagtgcgcggcgaggtctatatgccgcgc
gccgcgttcgaagcctacaacgcacagatgcgtgcgcagggcggcaaggtgctggccaac
ccgcgcaatggcgcggccggctcgctgcgccagctggatgcgcgcatcaccgcgcagcgc
ccgctgagcttctttgcctacggcgtcggcgaagtgagcgaaggcgcattgccgcagacc
cattcggcgatcctggcgcaactgcgtgcgtggggctttccggtcagcgcgctggtcgag
gtggtgcagggcagcgatggtctgctggcgtattaccagcgcatcggtgccgcacgcgat
gggctggccttcgatatcgatggcgtggtgtacaagctcgacgatctggccgggcaacgc
gaaatgggcttcgtctcgcgcgcgccgcgttgggcgattgcgcacaagttccccgcacag
gagcagtccaccacggtggaggcgatcgagatccagatcggccgcaccggtgcggccacg
ccggtggcgcgcctgaagccggtgcatgtggccggggtgatcgtcaccaatgccacgctg
cacaatgccgaccagatcgcgcggctggatgtgcgcgtgggcgacacggtgatcgtgcgc
cgcgccggggacgtcattcctgaagtggccgctgtggtggccgaccagcgcccgcccggt
acccaggcctggcagatgccgacgcaatgcccggtgtgcggttcgcagatcgtgcgcgaa
gaaggtcaggcggtctggcgctgttccggcgagttgacctgcccggcgcagcgcaaggag
gcgttccggcattttgtctcgcggcgcgcgatggatgtggacggcctgggcgaaaaattc
atcgaagtgctggtcgacagtggcctggtgaaaggcgtggccgacctgtatctgctaagc
gtggatcagctgctgcaattgcgcctgatcagcacggccgagagtccgcacgcgttcttg
cgcgaggcgcgcgagcatctggccagcggcgcatatgcgcagctggaaaccagcgtggtc
ggcatcggcgtggacctggccggcgagcgcgacgtgccgcagacctggcaggccgatctg
ctgcgcgcaggcttgccgcgcttcgactggaaccgcaagaagatcgccaccaagtgggcg
gagaatctgatcgaggcgatcgaaacatcgcgcgacaccacgctggagcgtttcctgttt
gcgctgggtatcgagcatgtgggcgaaagcacggccaaggcgttgtcggcctggttcggc
gatctggaattgatccggcatctgccgtggccgctgttcaagcgcgtgccggacatcggc
ggcgaagtggcgcgttcgcttgggcacttcttcgatcaggccggcaatcagcaggccatc
gatgacctgctgcagcgtggcgtgcgcatcggcgatacgcatccaccttcgcccaagctg
cgcgaggcgctgagttttgccagcgtgctggaagacatggacattcccaaggtgacgccg
gtgcgcgcgcagcagcttgccgcgtcggtggattcgttcgctgcgctgcgcacggccggt
gccgatgccttgcagcaggccggcgttccggcacccgtggtggccgcattgctgcaatgg
ctggatcgccccgaaaacactgcgctcgcgaatgcggcgcagcaggcgatggaaaccgtg
ctggcgcgtctgccccaagccgatgcgctgcagaccggcccgctcgatggccagaccgtg
gtcatcaccgggaccctggctgcgctgacacgcgatgcggccaagcagcggctcgaagca
ttgggcgccaaggtcgccggtagcgtctccaagaagacggcatttctggtggccggcgaa
gaagccggttccaagctcgacaaggcgcagtcgcttggcgtggagatctggggcgaagcg
cgtctgctggccttcctgggcgaccacggccaacagccatga
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