KEGG   Xenorhabdus doucetiae: XDD1_2701
Entry
XDD1_2701         CDS       T03784                                 
Symbol
ligA
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
xdo  Xenorhabdus doucetiae
Pathway
xdo03030  DNA replication
xdo03410  Base excision repair
xdo03420  Nucleotide excision repair
xdo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:xdo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    XDD1_2701 (ligA)
   03410 Base excision repair
    XDD1_2701 (ligA)
   03420 Nucleotide excision repair
    XDD1_2701 (ligA)
   03430 Mismatch repair
    XDD1_2701 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xdo03032]
    XDD1_2701 (ligA)
   03400 DNA repair and recombination proteins [BR:xdo03400]
    XDD1_2701 (ligA)
Enzymes [BR:xdo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     XDD1_2701 (ligA)
DNA replication proteins [BR:xdo03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     XDD1_2701 (ligA)
DNA repair and recombination proteins [BR:xdo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     XDD1_2701 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XDD1_2701 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     XDD1_2701 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      XDD1_2701 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 Nlig-Ia DNA_ligase_ZBD PTCB-BRCT 5_3_exonuc HHH RNA_ligase Prok-E2_C BRCT_2
Other DBs
NCBI-ProteinID: CDG18400
UniProt: A0A068QX25
LinkDB
Position
complement(2883661..2885679)
AA seq 672 aa
MENIILKINELRTTLRHHEHLYHVMDAPEIPDAEYDRLMRELKALEEQHPELITADSPTQ
RVGAAPLTAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKNGQDLVFCCELKLDGLA
VSLLYENGELVQAATRGDGTTGENITANVRTIRNIPLRLKGDNIPARVEIRGEVFMKQAG
FEKFNEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGVLEDGTLPASHY
ERLMQFKRWGLPVSDKVKLCQGTQQVMDFYHNIEQQRPTLGFDIDGVVVKVDSLELQERL
GFVARAPRWATAFKFPAQEQITIVRDVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVYESRPVDTQAVTFPAHCPVCDSDIERVEG
EAVARCTGGLFCAAQRKEALKHFVSRRAMDVDGMGEKIIEQLVDKEYVKTPADLFRLTAG
TLTGLERMGPKSAQNVINALEKAKKTTFARFIYALGIREVGEATAVNLVAHFGTLEKLRA
ADIDALIAVQDVGGVVARHVVNFFNEPHNQAVIDDLINNIGIHWEVTESLSLKEVDSPFT
GKTVVLTGSLSRLSRDEAKDKLAALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELGIPV
IDEEEMLRLLGE
NT seq 2019 nt   +upstreamnt  +downstreamnt
atggaaaatatcattctaaaaatcaacgaattaagaactacattacgtcatcacgaacac
ttgtatcatgttatggatgcgccagagatccctgatgcagaatatgatcgtttgatgcga
gaattaaaagcgctggaagagcagcatccagaactgattaccgcagactcgcctacccaa
cgtgtgggagctgcacccttaacggcgtttgagcaggtacgccatgagatcccgatgtta
tctctggataacgtctttgatgaagagagttatctggcatttgataagcgcgtccgtgat
cgtctgaaaaatggtcaggatctggtgttttgttgcgaactaaaactggatggtttagcg
gtcagtttactgtatgaaaatggcgaattggtacaagccgcaacacgtggcgatggaacc
acaggggagaatattaccgccaatgttcgcaccattcgtaacattcccctgcggttgaaa
ggggacaatattcccgcccgcgttgaaattcgtggcgaagtttttatgaagcaagccggg
tttgaaaaattcaacgaagaagcgcggcgcacaggcaataaagtcttcgctaatccccgc
aatgcggcggcgggatcattgcgtcagctcgatcctcgcattacggccaaacgcccgctg
actttctactgctatggtgtcggtgtgctggaagatggaacgttacctgcaagtcattat
gaacgcctgatgcagtttaagcgctggggattgcctgtcagtgacaaagtgaaattatgt
cagggaacgcaacaggtgatggatttctaccataacattgaacaacaacggccgacactg
ggttttgatattgatggggttgtggttaaagtcgattccctcgaattacaagaaagattg
ggttttgttgcccgtgcgccgcgttgggcaacggctttcaagtttcccgcccaggaacag
ataacgatcgtccgtgatgttgagtttcaggtagggcgtaccggtgccattacgccggtt
gcccgtttggagcctgtcttggtagccggtgtgacggtcagtaatgccacgttgcacaat
gccgatgaaattgaacgtctggggctgcgcattggtgatacagtgattgttcgccgtgcc
ggagatgtgatcccacaagttgtcggcgtggtgtatgaaagcaggccggtagacactcag
gcagtgactttcccggcacattgtccggtttgtgactcagatatcgagcgcgttgaaggc
gaagcggtcgcgcgttgtaccggcggcttgttttgcgcagcgcagcgcaaggaagcactg
aaacatttcgtgtcccgccgtgcgatggatgttgatggcatgggcgaaaaaatcattgaa
caacttgtcgataaagaatatgtcaaaacacccgccgatctgttccggttgacggccgga
acattaacgggccttgagcggatggggccaaaatctgcgcaaaatgtcattaatgctttg
gagaaagcgaagaaaaccacgtttgcgcgttttatttatgctttgggtattcgtgaagtc
ggcgaagcgacggctgtcaatttggttgctcattttggcacattggaaaaattgcgtgca
gcggacattgatgcactgattgcggtgcaggatgtgggcggtgttgttgcccgtcatgtc
gtgaatttctttaatgaaccgcataatcaggcggtaattgatgatctgattaataatata
ggtatccattgggaagtcactgaaagcctgagcctgaaggaggttgacagtccatttact
ggcaagacggtggtattgacaggttcattgagccgcttatcccgcgacgaagccaaagat
aagctggcagccttgggtgcaaaagtgacaggaagtgtgtccaaaaaaaccgatctggtc
attgccggcgaagcagcgggttccaagttagctaaagccaatgaattggggatacctgtt
attgatgaagaggaaatgctccgtttattgggtgaataa

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