Xenorhabdus doucetiae: XDD1_3802
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Entry
XDD1_3802 CDS
T03784
Symbol
ligB
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xdo
Xenorhabdus doucetiae
Pathway
xdo03030
DNA replication
xdo03410
Base excision repair
xdo03420
Nucleotide excision repair
xdo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xdo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XDD1_3802 (ligB)
03410 Base excision repair
XDD1_3802 (ligB)
03420 Nucleotide excision repair
XDD1_3802 (ligB)
03430 Mismatch repair
XDD1_3802 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xdo03032
]
XDD1_3802 (ligB)
03400 DNA repair and recombination proteins [BR:
xdo03400
]
XDD1_3802 (ligB)
Enzymes [BR:
xdo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
XDD1_3802 (ligB)
DNA replication proteins [BR:
xdo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XDD1_3802 (ligB)
DNA repair and recombination proteins [BR:
xdo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
XDD1_3802 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XDD1_3802 (ligB)
MMR (mismatch excision repair)
DNA ligase
XDD1_3802 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XDD1_3802 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
RNA_ligase
HHH_5
Motif
Other DBs
NCBI-ProteinID:
CDG19487
UniProt:
A0A068QWS6
LinkDB
All DBs
Position
complement(4019928..4021586)
Genome browser
AA seq
552 aa
AA seq
DB search
MLNFLIRFLITVWILLFGIPMAFANQAHCPEWSPEKFQHETEQLTQQVTKWDQLYRQQGM
SEIEDEIYDQLLETLGIWQRCLTHQSNRTFPSVSTSVNPINSATDTSVISARQEGKQFHP
VQHTGLHKLKGIEEIRRWLQGRTGVWLQPKIDGVAVTLVYKKGQLVQLISRGDGIEGTDW
MEKSAFIPTIPQRIKNAPEHLVLQGELFWQQENHRQSIAGSQGARSKVAGLMMRKTPVPE
LQQVGIFIWGWPDGPNEMAVKLARLSDMGFPFTSQYSHPITTAEEAEKRWRDYFVQPLPF
ATDGVVLRQELEPTGQQWRSGSNSWAIAWKYPLRQQMTTVTGVNFTVGRTGRISVVLDLE
KVKVDDRHVSRVNIGSIKRWKQWNVYPGDKITVALAGHGIPKLDKVVWRMAERPDIQPPN
EPDYHFLSCLSLDPENENNDEHYCRQQFIARLTWLGEKLQMKGVGQGTWSALVKHGLVAN
LTDWLDLDKPQLEAVPHIGTKRAELIFSQFQQAKLQPLSRWHEAIGLPHTKREKISAFLQ
HPEIKAVIFTGD
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgcttaattttctcattcgttttttaattacggtctggatactgctatttggcataccc
atggcatttgccaaccaggctcattgccctgagtggtcacccgaaaaatttcagcatgaa
actgagcaactgacacagcaggtcactaagtgggatcagctttatcgtcagcaaggtatg
agtgaaatagaggatgaaatctatgatcaattattggaaaccttagggatttggcaacgt
tgtttaactcaccagtcaaaccgcacttttccctcggttagtacttctgttaatccaatt
aattctgcgaccgacacgtctgtgatttcggcgcgacaggaagggaaacagtttcatccc
gtccagcacaccggtctgcataagttgaagggaatagaggagattcgccggtggttacag
gggcgaaccggggtgtggctgcaacctaaaattgatggcgttgcagtaaccttggtgtat
aaaaaaggtcaattagtgcagttaatcagccgtggtgatggtattgaaggaacagactgg
atggagaagagcgcatttattcccactattcctcagcggattaaaaatgcgcctgaacat
ttggtgttacaaggtgaacttttctggcagcaggaaaatcaccgacagtctattgcgggg
agtcagggcgcgcgcagtaaagtggcgggcttaatgatgcgtaaaacacccgtcccggaa
ctgcaacaggtgggcatttttatttggggctggccggatggacccaatgaaatggcggtg
aaactggcgcggttgtctgacatggggtttccgttcacaagccaatatagccaccccatt
accacggcagaagaggccgaaaaaagatggcgagattattttgttcagccgctccctttt
gcgacggatggtgtggttttacgccaagagcttgaaccgacaggtcagcaatggcgaagc
ggatcaaacagttgggcgattgcatggaaatatccgctgcgacagcaaatgaccactgtg
acaggggtgaatttcaccgtaggccggacagggagaatatccgttgtattagatctggaa
aaagtaaaggtggatgatcggcacgtgagtcgagtcaacatcggttccatcaaacgttgg
aaacagtggaacgtttatcccggcgataaaattacagtggcactggcggggcatgggata
cctaaactcgataaagtggtgtggcgtatggcggaacgtcctgatattcaaccccctaat
gaaccggattatcatttccttagctgtctgtcactcgaccctgaaaatgagaacaacgac
gaacattattgtcggcaacagtttatcgcacgcctgacatggcttggggaaaaattgcaa
atgaaaggcgtcgggcaaggaacgtggtcagcgttggtaaaacatgggctggtggcaaat
ttaaccgattggttggatttggacaaaccgcagcttgaggccgtgccccatattggcact
aaacgcgcggaattgattttttcccaatttcagcaagccaaattacagccgctttcacga
tggcacgaagccattggcctgcctcataccaaaagagaaaaaatctcagcttttttacag
catcctgaaattaaggccgttatctttacaggggattaa
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