Xanthomonas dyei: NYR95_04650
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Entry
NYR95_04650 CDS
T09460
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
xdy
Xanthomonas dyei
Pathway
xdy00300
Lysine biosynthesis
xdy00550
Peptidoglycan biosynthesis
xdy01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
xdy00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
NYR95_04650
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
NYR95_04650
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
xdy01011
]
NYR95_04650
Enzymes [BR:
xdy01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
NYR95_04650
Peptidoglycan biosynthesis and degradation proteins [BR:
xdy01011
]
Precursor biosynthesis
Amino acid ligase
NYR95_04650
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
PreAtp-grasp
Motif
Other DBs
NCBI-ProteinID:
WOB56142
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All DBs
Position
1095628..1097103
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AA seq
491 aa
AA seq
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MPLSQLLPDLTLARDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAVAVL
FEPPAPADLPAPADAIAVPGLRARLGSMADQFHGHPSHTLRMVGVTGTNGKTSTVQLLAQ
ALTLLGTPTGTLGTLGVGLYGSAVPTGFTTPLVLSTHALLAQLRDEGAQAAAMEVSSHAL
DQGRVDAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLQTAVVNLDDAFGRTL
LASLDPALRAIGVSSRGQAGATVRADALQLDHNGISFALRIDASVHAVHSSLLGRFNVDN
LLAVAGALHALDHAPAQIAQVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALA
SLRSHAQDRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDVIVADIVR
GFARPDAAIVQRDRAAAIHQAIAMASASDIVLIAGKGHEPYQEVAGVQHAFDDAAVAAQA
LLPRTVLGVRA
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgtcgcagctgctgccggacctgacccttgcgcgcgatgtgcaggtgtccggc
ctggtgatggatagccgtgcagtgcgcccaggcgatgcgttcgtggcgatcgcaggcttc
ggcgcgcatgggctgggcttcgtcgagcaggcgcgcgccaatggtgcggtagcggtgttg
ttcgagccgcccgcgcctgccgatctgccggcgcctgccgacgccatcgccgtgcccggc
ttgcgtgcgcggcttggcagcatggccgatcagtttcatggtcatccgtcgcacacattg
cggatggtgggcgtcaccggcaccaacggcaagacctccaccgtgcagttgctggcgcag
gcgctgaccttgctcggcacgcccactggcacgctcggtacgctgggcgtcggcctgtat
ggcagcgccgtcccgaccggtttcaccacgccgctggtgctgtccacgcacgcgttgctg
gcacagctgcgcgatgaaggcgcgcaagccgcagcgatggaagtcagctcgcacgcgctc
gatcagggccgcgtggatgcggtgcatttcgacgtggctgtgttcaccaatctcactcgc
gatcatctcgattatcacggcgatatggcgcagtacggcgcggccaaggccaagctgttc
acgcgcgctgggttgcagactgcggtggtgaatctggacgacgcattcggccgcacgctg
ctggcctcgctcgatcctgcgctgcgcgcgatcggcgtgagttcgcgcgggcaggctggc
gccacggtgcgcgccgacgcactgcaactggatcacaacggcatcagcttcgcgctgcgg
atcgatgccagcgtccacgccgtgcattcgtccttgctgggtcgcttcaacgtggacaac
ctgctggcggtcgccggtgccttgcacgcgctggaccatgcgccggcgcagatcgcccag
gtgctgggccagctgcagccgatccacggccgcatgaatcgtctcggcggcgcgcacggc
gcaccgctggtggtggtcgattacgcacacacgcccgacgcgctggaacaggcactggcc
agcctgcgctcgcatgcgcaggaccggctgatctgcgtgttcggttgcggcggcgaacgc
gacaccggcaagcgcccgcagatggccgccattgccgaactcaatgccgatgtggcgatc
gtcaccgacgacaacccgcgcggcgaagacggcgatgtcatcgttgccgatatcgtgcgc
ggttttgcgcgcccggatgcggccatcgtgcagcgcgaccgcgccgccgcgatccatcag
gccatcgccatggccagcgcgtcggacatcgtgctgatcgccggcaagggccacgagccc
taccaggaagtggccggcgtgcagcatgccttcgacgatgcagcggtggcggcgcaggcc
ttgctgccgcgcaccgtgctgggagtgcgcgcatga
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