Xanthomonas dyei: NYR95_09575
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Entry
NYR95_09575 CDS
T09460
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xdy
Xanthomonas dyei
Pathway
xdy03030
DNA replication
xdy03410
Base excision repair
xdy03420
Nucleotide excision repair
xdy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xdy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NYR95_09575 (ligA)
03410 Base excision repair
NYR95_09575 (ligA)
03420 Nucleotide excision repair
NYR95_09575 (ligA)
03430 Mismatch repair
NYR95_09575 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xdy03032
]
NYR95_09575 (ligA)
03400 DNA repair and recombination proteins [BR:
xdy03400
]
NYR95_09575 (ligA)
Enzymes [BR:
xdy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NYR95_09575 (ligA)
DNA replication proteins [BR:
xdy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NYR95_09575 (ligA)
DNA repair and recombination proteins [BR:
xdy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NYR95_09575 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NYR95_09575 (ligA)
MMR (mismatch excision repair)
DNA ligase
NYR95_09575 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NYR95_09575 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
DUF6982
Motif
Other DBs
NCBI-ProteinID:
WOB55755
LinkDB
All DBs
Position
2176867..2179368
Genome browser
AA seq
833 aa
AA seq
DB search
MTVSPDPAQRIDALRRRIEDANYRYHVLDEPQMADVDYDRLMRELDALEAEHPALAAADS
PTQRVGHLAASRFAEVRHALPMLSLGNAFSDEEVSEFVRRISERLELKQPVFSAEPKLDG
LAISLRYEDGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGQGWPKVLEVRGEVYMPR
AAFEAYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVRDGALPQT
HSAILAQLRDWGFPVSQLVEVVQGSEGLLAYYQRIGAARDGLAFDIDGVVYKLDDLAGQR
EMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATL
HNADQIARLDVRVGDTVIVRRAGDVIPEVAGVVADQRPPGTQEWRMPTQCPVCGSEIVRE
EGQAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVQGVADLYLLN
VDQLLQLRLISTADSPHAFLREAREHLATGAYAQLETTVARIGVDLAGEHEAPQTWQADL
LRAGLPSFDWNRRKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKALAAWFG
DLELIRHLPWPLFKRVPDIGGEVARSLGHFLDQPGNQQAIDDLLQRGVRIGDAHPPSPKL
RDALSFASVLEDMDIPKVTPVRAQQLAAAVPSFDALRTVGSDALLQAGVPAPVVAALLQW
LDRPENAALATSAQQAMETVLARLPDAEAVQAGPLDGQTVVITGTLAALTRDAAKQRLEA
LGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVDIWDEARLLAFLGEHGQQP
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcagcccggatcccgctcagcgcatcgatgccttacgtcgtcgaatcgaagac
gcgaactaccgctatcacgtgctcgacgagccgcagatggccgacgtcgattacgaccgc
ctgatgcgtgagctggatgcgctggaagccgagcacccggcactggccgctgccgattcg
ccaacgcaacgggtgggccatctggccgcgtcgcgctttgccgaagtgcggcatgcgctg
ccgatgttgtcgctgggcaacgccttcagcgatgaggaagtgagcgagttcgtgcgtcgc
atcagcgagcggttggagctcaaacagccggtgttctcggccgaacccaagctcgatggc
ctggcgatcagcctgcgctacgaagacggcgaattcgtgcagggtgcgacccgtggcgac
ggcgccaccggcgaagatgtcagcgccaatctgcgtacggtcaaggcgattccattgcgc
ctgcgcgggcaggggtggccgaaggtgctggaagtgcgcggcgaggtctacatgccgcgc
gccgcgttcgaggcgtacaacgcgcagatgcgcgcgcagggcggcaaggtactggccaat
ccgcgcaatggtgcggccggttcgctgcggcagctggatgcgcgcatcactgcgcagcgc
ccgttgagtttctttgcgtatggcgtgggtgaagtgcgcgacggcgccttgccgcagacg
cattcggccatcctggcgcaattgcgcgactggggatttccggtcagccagctggtcgaa
gtggtacagggcagcgagggtttgttggcgtactaccaacgcattggtgcggcgcgcgat
gggctggccttcgatatcgatggcgtggtgtacaagctcgacgatctggccggccagcgt
gagatggggtttgtctcgcgcgcgccgcgctgggcgattgcgcacaaattcccggcgcag
gagcaatccaccacggtggaggcgatcgagatccagatcgggcgtaccggtgcggcgacg
ccggtggcgcgactgaagccggtacatgtggccggcgtgatcgtcaccaacgcgaccttg
cataacgccgaccagattgcgcggctggatgtgcgcgtgggcgatacggtgatcgtgcgc
cgtgccggcgatgtgattccggaagtggccggcgtggtcgccgaccagcgcccgccgggc
acgcaggaatggcgcatgcccacccagtgcccggtgtgcgggtcggagatcgtgcgcgaa
gaaggccaggcggtatggcggtgctcgggcgagttgacctgcccggcgcagcgcaaggag
gcgtttcggcatttcgtgtcgcggcgtgcgatggatgtcgacggtctgggcgagaaattc
atcgaggtgctggtcgatagcgggctggtgcaaggtgtggccgatctgtatctgctcaac
gtcgatcaactgctgcaactgcgcctgatcagcaccgcggacagtccgcatgcgttcttg
cgcgaggcgcgcgagcatctggcaaccggtgcgtatgcgcagctcgaaaccaccgtggcg
cgcatcggtgtagatctggctggcgaacatgaggcgccgcagacctggcaggccgatctg
ctgcgtgcagggctgccgagcttcgattggaaccgtcgcaagatcgccaccaaatgggcc
gagaacctgatcgaggcgatcgaaacatcccgcgacaccacgctggagcgctttctgttc
gcactgggcatcgagcatgtgggcgagagtacggccaaggccttggcggcgtggttcggc
gatctggagctgattcgccatctgccgtggccactgttcaagcgcgtgcccgatatcggt
ggcgaagtggcgcgttcgctcgggcacttcctcgatcagccgggcaaccagcaggccatc
gacgatttgctgcaacgtggcgtgcgcatcggcgatgcacatccgccatcgcccaagctg
cgcgatgccttgagttttgccagcgtgctggaagacatggacattcccaaggtgacgccg
gtgcgcgcgcagcaactggcggcggcggtgccgtcgttcgatgcgctgcgcactgtcggc
agcgacgcgttattgcaggccggcgtgcccgcaccagtggtcgccgcgctgctgcaatgg
ctggatcgcccggaaaatgcggcactcgccacatcggcacaacaggcgatggaaacagtg
ctggcgcgcctgcccgacgccgaggccgtgcaggccggccccttggacggccagacggtc
gtgatcaccggcaccttggccgccttgacgcgcgatgccgccaaacagcggctcgaagca
ttaggcgccaaggtggccggcagcgtctccaagaaaaccgcgttcctggtggccggcgag
gaggccggctccaagctcgacaaggcgcaatcgctgggtgtggacatctgggacgaagcg
cggctgctggccttcctgggcgagcacggccaacagccatga
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