Xenia sp. Carnegie-2017 (soft corals): 124443667
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Entry
124443667 CDS
T08024
Name
(RefSeq) TAR DNA-binding protein 43-like isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124443667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xen03019
]
124443667
Messenger RNA biogenesis [BR:
xen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
124443667
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TDP-43_N
RRM_1
RRM_PARP14_3
RRM_7
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
124443667
NCBI-ProteinID:
XP_046850103
LinkDB
All DBs
Position
Unknown
AA seq
399 aa
AA seq
DB search
MCDYIRVAEDEQMPEEEIELPSDEDGTILLSTVQAQFPGSIGLRFRNEETQSWRGVRLAN
GILYPPVNGWGNALYIAVTVKTDSADADSSSKRKYEESPTGREPHSKIMKNYSMETDQDL
LSDMIVLGLSWKAKDEDLFEYFSRFGELDFYEVKRNQQTGQSRGFAFIRFKDANVARTVL
ARTHTILGRRVDIRSPKGKDDAPRKIFIGRLPSNCTASDVHSYFEKYGTLVDVYIPQPFR
QFGFVTFASSEAARNVLARVHVLNGARINCTPAEPKAQSKGHAKNAHESPSHTREMPGIW
GGNILPYMNTPDRGGTSAFANQMNAMWNMAALAQGMAAGMVGGMGGNMSSPMNTSGMSSS
AGGSGMSPQFMLSNMNGASGMGMSHSGSSGMEGGHDQRF
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgactatattcgtgttgctgaagacgagcaaatgccagaggaggaaatagaacta
cctagtgacgaagatggcacaattttactgtctacagttcaagcacagtttccaggaagc
attggtttacgatttcgaaacgaagagacacagtcatggcgtggagttagacttgcaaat
ggcatactttatcctcccgtaaacggttgggggaatgcactgtatatagctgtaacggtg
aaaacagactcagcagatgcagacagctcatccaaaagaaaatacgaagaatcgcccact
ggacgtgaaccacattctaaaattatgaagaactactcaatggagacggatcaagattta
ctgagcgatatgattgttctggggctttcatggaaagcaaaagatgaagatttatttgaa
tatttctctcgatttggagaacttgacttttacgaagtgaaacgtaaccagcagacagga
cagtctcgaggatttgcatttattcgctttaaagatgcaaatgtggctagaacagttctg
gcacgtacacataccatattaggtcgtagagtcgacattaggtctcccaaaggaaaggat
gatgcaccacggaaaatatttattggacgtttgcccagcaattgcactgcatcagatgtt
cactcctattttgaaaagtatggtacattagttgatgtgtatataccacagccttttagg
cagtttggttttgttacatttgcatccagtgaggctgcacgtaatgtacttgcccgtgta
catgttctgaatggtgctcgtataaattgcacaccagcagaaccaaaagctcaaagtaaa
gggcatgctaaaaatgctcatgaaagtccaagccatactcgtgaaatgccaggaatttgg
ggtggtaatattttaccgtacatgaatactcctgatcgtggtgggaccagtgcctttgct
aaccaaatgaatgcaatgtggaatatggcagctttggctcaggggatggcagctggcatg
gttggaggtatgggaggtaatatgagttcacctatgaacacgagtggtatgagtagttca
gctggtggtagtggtatgtctccacagtttatgcttagcaacatgaatggtgcaagtgga
atgggaatgagtcattcaggatcaagtgggatggaaggaggacatgatcaaaggttttga
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