Xanthomonas fragariae: BER92_08470
Help
Entry
BER92_08470 CDS
T04667
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xfr
Xanthomonas fragariae
Pathway
xfr03030
DNA replication
xfr03410
Base excision repair
xfr03420
Nucleotide excision repair
xfr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BER92_08470
03410 Base excision repair
BER92_08470
03420 Nucleotide excision repair
BER92_08470
03430 Mismatch repair
BER92_08470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xfr03032
]
BER92_08470
03400 DNA repair and recombination proteins [BR:
xfr03400
]
BER92_08470
Enzymes [BR:
xfr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BER92_08470
DNA replication proteins [BR:
xfr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BER92_08470
DNA repair and recombination proteins [BR:
xfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BER92_08470
NER (nucleotide excision repair)
GGR (global genome repair) factors
BER92_08470
MMR (mismatch excision repair)
DNA ligase
BER92_08470
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BER92_08470
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
AOD14767
LinkDB
All DBs
Position
1864651..1867152
Genome browser
AA seq
833 aa
AA seq
DB search
MTASPDPVQRIDALRRRLEDANYRYHVLDEPQMADVDYDQLMRELEALEAAHPELASADS
PTQRVGHLAASRFAEVRHVLPMLSLDKAFSDEEVAEFVRRISERLGVKQPRFSAELKLDG
LAISLRYENGQFAQGATRGDGVTGEDVSANLRTVKAIPLRLRGESWPRVLDVRGEVYMPR
AAFETYNAQMRLHGGKMLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGQVSDGALPQT
HSAILRQLREWGFPVSSLVDVVQGTDGLLAYYQRIGAARDGLPFDIDGVVYKLDDLAGQR
EMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATL
HNADQIARLGVRVGDTVIVRRAGDVIPEVASVVADQRPPGTQPWQMPMQCPVCGSEIVRE
EGEAVWRCSGELICPAQRKKAFRHFVSRRAMDVDGLGEKFIEVLVDSGVVQGVADLYLLS
VDQLLQLRLISTAESPHAFLREAREHLATGAYAQLETTVASIGVDLAGEREVPPAWQADL
LRAGLPRFDWNRKKIATKWAENLIQAIEQSRDTTLERFLFALGIAHVGESTAKALSAWFG
DLQLIRHLPWPLFKRVPDIGGEVARSLGHFLDQPGNQQAIDDLLQHGVRIGDAHPPSPRL
RDALSFASVLEDMEILKVTPVRAQQLAAAVASFDALRGAGSDALLQAGIPAPVVDSLLHW
LERPENAALASAAQHAMETVLSRLPEADAEQTGPLDGQTVVITGTLAALTRDAAKQRLEA
LGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGAHGQQP
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgactgccagcccggatcccgttcagcgcatcgatgccttgcgtcgtcgtctcgaggac
gcgaactatcgctatcacgtgctcgacgagccgcagatggccgacgtcgactacgaccag
ttgatgcgtgaactggaggcgctggaagcggcgcatccagagctggccagcgccgattcg
ccaacccagcgcgtcggccatctggctgcctcgcgctttgccgaagtccggcatgtcttg
ccgatgctgtcgctggacaaggccttcagcgatgaggaggtggccgagttcgtgcgccgc
atcagcgagcggcttggagtcaaacagccgcggttttcggccgaactcaagcttgatggt
ctggcgatcagtctgcgctacgaaaacggccagttcgcgcagggcgccacgcgtggcgat
ggcgttaccggcgaggacgtcagcgccaatctgcgcactgtcaaggcgattccgctacgc
ctgcgtggcgaaagttggccgcgcgtgttggacgtgcgtggcgaggtatatatgccgcgc
gccgcattcgaaacctacaacgcgcagatgcgcctgcacggcggcaagatgctggccaat
ccgcgcaatggcgcggccggttcgctacgtcagctggatgcgcgcatcaccgcgcagcgc
ccgctgagtttctttgcctacggcgttggccaagtcagcgacggcgcattgccacaaacg
cattcggccatcctgaggcagttacgcgaatggggtttcccggtcagctcgctggttgat
gtcgtgcaaggcaccgacggtttgttggcgtattaccagcgcattggtgccgcgcgcgat
ggcttgccattcgacatcgatggcgtggtctataaactcgacgatctggccgggcagcgc
gaaatgggttttgtctcgcgcgcaccgcgttgggcgatcgcgcataaatttccggcgcag
gagcagtccaccacggtggaggcaatcgagatccagatcggtcgtaccggtgcggcaacg
ccggtggcgcgcttgaagccggtgcatgtggctggggtaatcgtcactaatgccacgctg
cacaacgccgaccagattgcgcggctgggtgtgcgcgtgggcgatacggtgatcgtgcgg
cgtgccggcgatgtgatccccgaggtggccagcgtggtcgccgatcaacggccgcccggc
acgcaaccatggcagatgcccatgcaatgcccagtgtgcggttcggagatcgtgcgcgag
gaaggcgaagcggtctggcgctgctctggcgagctgatctgcccggcgcagcgcaagaaa
gcgttccggcatttcgtgtcgcgtcgtgcgatggacgtcgatggcctgggcgaaaaattc
atcgaggtgctggtcgatagcggcgtggtgcagggcgttgccgatctgtatctgttgagc
gtggatcagctgctgcaattgcgcctgatcagcacggccgaaagcccgcatgcgtttctg
cgcgaagcgcgcgagcatctggccaccggtgcgtatgcacagctggaaaccaccgtggcc
agcatcggggtggatctggccggcgagcgtgaggtgccgccggcctggcaggccgatctg
ctgcgcgccggcctgccgaggttcgactggaaccgcaagaagatcgccacaaagtgggcc
gaaaacctgatccaagcgatcgaacagtcgcgcgacacaacgctcgaacgctttctgttt
gcgctgggcatcgcgcatgtgggggagagcacggccaaggcgctctcggcctggttcggc
gatctgcaactgatccgccacctgccgtggccgctgttcaagcgcgtgccggatatcggt
ggcgaagtggcgcgctcgcttgggcatttcctcgatcagcccggcaatcagcaggccatc
gatgatttgttgcagcatggcgtgcgcatcggcgatgcgcatccgccatcgcccagactg
cgcgacgcgctgagttttgccagcgtgctggaagacatggagatactcaaggtgacgccg
gtacgtgcgcagcagttggccgccgcggtggcctcattcgatgcgctgcgcggcgcgggg
tccgatgcgttgttgcaggccggcattcctgcgccggtcgtggactcgctgctgcactgg
ctggagcgcccggaaaatgccgcattggccagtgctgcgcaacacgcaatggagacggtg
ctgtcgcgtctgccagaagccgatgcggagcagaccggcccgctcgatggacagacggtg
gtcatcaccggcaccttggctgcgttgacgcgtgacgctgccaagcagcgactggaagcg
ttgggcgccaaagtcgccggcagcgtctcgaagaaaaccgcgtttctagtggctggcgaa
gaggccggctccaagcttgacaaggcgcagtcgctgggcgtggagatctgggacgaagcg
cgcttgctggcgttccttggcgcacacggccaacagccatga
DBGET
integrated database retrieval system
