Xanthomonas hortorum pv. gardneri: BI317_15110
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Entry
BI317_15110 CDS
T04668
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xga
Xanthomonas hortorum pv. gardneri
Pathway
xga03030
DNA replication
xga03410
Base excision repair
xga03420
Nucleotide excision repair
xga03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BI317_15110
03410 Base excision repair
BI317_15110
03420 Nucleotide excision repair
BI317_15110
03430 Mismatch repair
BI317_15110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xga03032
]
BI317_15110
03400 DNA repair and recombination proteins [BR:
xga03400
]
BI317_15110
Enzymes [BR:
xga01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BI317_15110
DNA replication proteins [BR:
xga03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BI317_15110
DNA repair and recombination proteins [BR:
xga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BI317_15110
NER (nucleotide excision repair)
GGR (global genome repair) factors
BI317_15110
MMR (mismatch excision repair)
DNA ligase
BI317_15110
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BI317_15110
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
APP85295
LinkDB
All DBs
Position
complement(3263734..3266235)
Genome browser
AA seq
833 aa
AA seq
DB search
MTVSPDPAQRIDALRHRLEDANYRYHVLDEPQMADVDYDRLMRELEALEAAHPQLASADS
PTQRVGYLAASRFAEVRHALPMLSLGNAFSDEEVAEFVRRISERLEVKQPLFSAEPKLDG
LAISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPHILEVRGEVYMPR
AAFETYNAQMRLHGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQT
HSAILAQLREWGFPVSALVEVVQGSDGLLAYYQRIGAARDGLPFDIDGVVYKLDDLAGQR
EMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATL
HNADQIARLDVRVGDTVIVRRAGDVIPEVAGVVADQRPPGTQPWQMPTQCPVCGSEIVRE
EGEAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGVVQGVADLYLLT
VDQLLQLRLISTAESPHAFLREAREHLATGAYAQLENTVVSIGVDLAGEREVPQTWQADL
LRAGLPAFDWNRKKIATKWAENLIEAIEKSRDTTLERFLFALGIEHVGESTAKALSAWFG
DLELIRHLPWPLFKRVPDIGGEVARSLGHFLDQPGNQQAIDDLLQRGVRIGDAHPPSPKL
RDALSFASVLEDMDIPKVTPVRAQQLAAAVDSFDALRSAGADALLQAGVPAPVVASVQQW
LERPENAALASAAQQAMETVLSRLPEADVLQTGPLDGQTVVITGTLAALTRDAAKQRLEA
LGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGEHGQQP
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcagcccggatcccgcgcagcgtatcgacgccctgcgtcatcgtctcgaggac
gccaactaccggtatcacgtgctcgacgagccgcagatggccgacgtcgactacgaccgc
ctgatgcgcgaactggaggcgttggaggccgcgcatccgcagctggccagcgccgattca
ccgacccagcgcgtcggctatctggctgcctcgcgctttgccgaagtgcgacatgccttg
ccgatgttgtcgctgggcaatgccttcagcgatgaggaagtggccgagttcgtgcgtcgc
atcagcgagcggctcgaggtcaagcagccgctgttttctgccgagcccaagctcgatggt
ctggcgatcagcctgcgctacgaaaacggcgagttcgtgcagggcgccacgcgtggcgac
ggtgccaccggcgaggatgtcagcgccaacctgcgcaccgtcaaggcgattccgctacgt
ctgcgtggcgaagggtggccacacattctggaagtgcgcggcgaggtgtatatgccgcgc
gccgccttcgaaacctacaacgcgcagatgcgtctgcatggcggcaaggtgttggccaac
ccgcgcaacggtgcggccggttcgctacgtcagctggatgcgcgcatcaccgcgcaacgc
ccgctgagtttcttcgcgtatggcgtgggcgaagtgagcgaaggcgcattgccgcagacc
cattcggcgatcctggcgcagctgcgcgaatggggtttcccggtcagcgccctggtcgag
gtagtgcagggcagtgacgggctgttggcgtattaccagcgcattggtgccgcgcgcgac
gggctgccattcgatatcgatggcgtggtctacaagctcgacgatctggccgggcagcgc
gagatgggctttgtctcgcgcgcgccgcgttgggcgatcgcgcacaaattcccggcgcag
gagcagtccaccacggtggaagcgatcgagatccagatcgggcgtaccggtgcggccacg
ccggtggcgcggctgaagccggtgcatgtggccggggtgatcgtcaccaacgcgaccttg
cacaacgccgaccagattgcgcggctggatgtgcgcgtgggcgatacggtgatcgtgcgg
cgcgccggcgatgtgattccggaagtggccggcgtggtcgccgatcaacggccacccggc
acgcagccatggcagatgcccacgcaatgcccggtgtgcggctcggagatcgtgcgcgag
gagggcgaagcggtgtggcgttgctccggcgagctgacctgcccggcgcagcgtaaggaa
gcgttccggcatttcgtctcgcgccgcgcgatggatgtcgatggcctgggcgaaaaattc
atcgaggtgctggtcgatagcggcgtggtgcagggcgttgccgatctgtatttgctcaca
gtcgatcagctgctgcagttgcgtctgatcagcaccgccgaaagtccgcatgcgttcttg
cgtgaagcgcgcgagcatctggccaccggtgcgtatgcgcagctggaaaacacggtagtc
agtatcggtgtggatctggctggcgagcgcgaggtgccgcagacctggcaggccgatcta
ttgcgcgccggcttgccggccttcgactggaaccgcaagaagatcgccaccaagtgggcg
gaaaacctgatcgaggcgatcgaaaaatcgcgggacaccacgcttgaacgtttcctgttt
gcgctgggcatcgagcatgtcggcgagagcacggccaaggcgttgtcggcctggttcggc
gatctggaactgatccgccacctgccgtggccgctgttcaagcgcgtgcccgatatcggt
ggcgaggtcgcacgctcgctcgggcactttctcgatcagcccggcaatcagcaggccatc
gacgatctgctgcaacgtggcgtgcgcattggcgatgcacatccgccttcgcccaagctg
cgcgacgcgctgagttttgccagcgtgctggaagacatggatatccccaaggtgacgccg
gtgcgtgcgcagcaactggccgccgcagtggactcgttcgatgcgttgcgcagcgccggt
gccgatgccttgctgcaggccggcgtccccgcgccggtcgttgcctcggtgcagcagtgg
ctggagcggccggaaaacgcggccttggccagcgccgcgcagcaggcgatggaaacggtg
ctctcgcgcctgcccgaagccgatgtgctgcagaccggtccgctcgacggccagaccgtg
gtcatcaccggcaccttggccgcattgacgcgcgatgccgccaagcagcgcctggaagcg
ttgggcgcgaaagtcgccggcagcgtctccaagaaaaccgcgtttctggtggctggcgaa
gaagccggttccaagctcgacaaggcgcagtcgctgggcgtggagatctgggacgaagcg
cggctgctggcgtttctcggcgagcacggccagcagccatga
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