Xiphias gladius (swordfish): 120782911
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Entry
120782911 CDS
T07311
Symbol
tardbpb
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120782911 (tardbpb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgl03019
]
120782911 (tardbpb)
Messenger RNA biogenesis [BR:
xgl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
120782911 (tardbpb)
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Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP43_N
RRM_1
RRM_7
RRM_3
OB_RNB
Motif
Other DBs
NCBI-GeneID:
120782911
NCBI-ProteinID:
XP_039971402
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Position
LG21:14742261..14747734
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AA seq
405 aa
AA seq
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MAEVYIRVAEEENEEPMEIPSEDDGTVLLSTVAAQFPGACGLRFRSPVSQCMRGVRLVEG
VLHAPENGWGNVVYVVNYPKDNKRKMDEIDASSAVKMKRGDMKTSDLIVLGLPWKTTEQD
LKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFTEYEAQEKVISQRHMIDGRWCDCKLPN
SKVNMQGPDEPLRSRKVFVGRCTEDMTTDDLRQFFMQYGEVTDVFIPKPFRAFAFVTFAD
DQVAQSLCGEDLIIKGVSVHISNAEPKHGNRQFDRTARFGNGFGAQAFGSSRSGLGSSTN
SSLANFGSFSLNPAMMAAAQAALQSSWGMMGMLASQQQTSTSGSTSSGTSSSRDQSQSFS
TGNSNYGTSSASLGWGTGSNSTTSGSGFSSGFGSSMESKSSGWGM
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagtatacattcgagtagcagaggaggaaaacgaggaacccatggagatcccg
tccgaggatgacggcactgttctgctttcaaccgtggcagctcagtttccaggggcgtgc
ggccttcgtttcaggagccccgtgtctcagtgcatgcggggagtacgtcttgtggaaggg
gtcctacacgcaccagaaaacggatggggcaacgtcgtgtatgtcgtgaactatccaaaa
gacaacaaaaggaaaatggatgaaatagatgcctcctctgctgtgaaaatgaagagaggc
gatatgaagacatctgacctgatcgtactgggtctgccttggaaaacaacagagcaggac
ctgaaagactactttagtacatttggagaagtcatcatggttcaggtaaaacgagacgcc
aagactggaaattctaaaggttttggctttgtgaggttcacagagtacgaggctcaagaa
aaggtgatctcccagcgccatatgattgacgggagatggtgtgactgcaagctccctaac
tcgaaggtgaatatgcaaggtccagatgagccattaaggagccgcaaagtttttgtaggc
cgctgcacagaagacatgaccacagacgacctacggcagttctttatgcagtatggagaa
gttacagatgtcttcattcccaagccattccgtgcttttgcctttgtcacgtttgcagat
gatcaggttgcccagtcactctgtggagaggacctaattatcaaaggtgtcagcgttcac
atctcaaacgctgagcccaaacacgggaataggcagtttgaccgtacagcacggtttggg
aatggctttggagcgcaagcatttggtagcagccgtagtgggttagggagcagcactaac
agtagtctggctaattttggttccttcagtctgaaccctgctatgatggctgctgctcag
gctgctctgcagagtagttgggggatgatgggtatgctggctagtcagcagcagacatcc
acctcaggcagcacttccagtggaacaagctctagtagggaccagagtcagtctttcagt
acaggcaacagcaactacggcaccagctcagccagtcttggctggggaacagggtcaaac
tccacaaccagtggtagtgggtttagctcagggtttgggtccagtatggagtcaaagtca
tctgggtggggtatgtaa
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