Xiphias gladius (swordfish): 120785238
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Entry
120785238 CDS
T07311
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
120785238 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xgl03000
]
120785238 (kdm2ab)
04121 Ubiquitin system [BR:
xgl04121
]
120785238 (kdm2ab)
03036 Chromosome and associated proteins [BR:
xgl03036
]
120785238 (kdm2ab)
Enzymes [BR:
xgl01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
120785238 (kdm2ab)
Transcription factors [BR:
xgl03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
120785238 (kdm2ab)
Ubiquitin system [BR:
xgl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
120785238 (kdm2ab)
Chromosome and associated proteins [BR:
xgl03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
120785238 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
120785238 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
JmjC
F-box
LRR_6
Cupin_8
DUF7885
LRR_8
Cupin_1
C1_1
LRR_4
Motif
Other DBs
NCBI-GeneID:
120785238
NCBI-ProteinID:
XP_039975711
LinkDB
All DBs
Position
LG23:complement(14691487..14708235)
Genome browser
AA seq
1303 aa
AA seq
DB search
MDDSHTRYSKRLRTGTRRRYQDDGISDDEIEGKRMFDLDEKLQCNRFSSDLVKHMEGKDF
TFEYIQREGLREPIIFKTADGLGIQMPDPDFSVSDVKLFVGSRRIVDVMDVNTQKGIEMS
MAQWRRYYETPPSEREKLYNVISLEFSHTRLENLVKRPASVDLIDWVDNMWPRHLKERQR
DSTNAIIDMHYPKVQKYCLMSVQGCFTDFHIDFGGTSVWYHILRGGKVFWLIPPTPQNLE
MYENWVLSGKQGDIFLGDKCHDCQRIELKQGNTFIIPSGWIHAVYTPEDTLVFGGNFLHS
FNIPMQLNIYSIEDRTRVPAKFRYPFYYEMCWYVLERYLYCLTNISHLTPEFQKYSLGIG
LTPADLETNDHTGNGTSNGVDSDTEKAEIMFKEEEIIEEEEAGQVTAPQHVLTPFELEGL
WNLLGKLEELPANKKCVPAGIRNAAALLEDMRTVLKEHTNDNPKLSYTGEPIVKWPNRPS
WYQPPTPPPPVFYRPRLGPHLHKPLGQRSTKRSSISALRRRRVRCKRCSACCRKECGTCQ
YCHDMRKFGGPGRMKKSCIMRQCLAPALPNTARCAICGEGESDESNPSPHSLMECSVCSQ
IAHRQCIKEPGEGKINKDLPSCWECPKCYQGKGSASESSSDEESGESDGSSSLPPSKLAY
REGIGVGEGVRRRTRNRPQSRPTAPPPSQKLLLQHQQNRKRASALELRLKKRIKLERSKL
LVKQSSLDRSPRLLGSRALSRLRSPTSRLSQGRGRASTWASGPPYHSSPGGTGSFQQQQS
SVSLVLEPKGEPRRGRGRGVRLRGGGAGRGIRGDRHHGDLEEESEDSSSSSTNSSSSSDE
EEERGQNSGRGGDKENQPQSRRGGRAAKDGDEEGSEVANQNCAEEDEEDEMEQDSQTGDK
DGSYLKVTLQRPTRAKQDPSAIVPKLEAIAPQTTSSTIHNQTRALVRPPIRNRGPCPDQQ
SIRHTPPHTRSGHTDTRTSHPERLEVSKRPRPSRPAKLSNGASCSSSSELPHLRIPLSAL
QEGGSEGDRENTGSGPGCEREVWVSVFRYLSRADLCVCMAVCKNWYKWCLDKRLWARIDL
SIKRTVTPQALTGIIKRQPVTLDLSWTNISKKQLNWLVGRLPGLKDLMLAGCSWSSISAL
CSSGCPLLRSLDLRYADGVKDSQIRDLVSPPDCDNRSQLRTMQCLRLAGLDISDSTLRLV
IRHMPHLTKLDLSHCNSLTDHSINLLTAVGSSTRNTLTELNLGGCSKLTDTCLKYLRRLS
CISLLDLRGCKGVSRKACEAFISELSVNTLYCLSDEKLIQRIS
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atggatgattctcatacacggtacagcaaacgtctgcgtacaggtacgcggcgccgctac
caggacgatggaatctcagatgatgaaattgaagggaaacgaatgtttgacctggatgaa
aagttgcagtgcaacaggtttagctctgatttggtcaaacacatggagggtaaagatttc
acatttgaatacatccagagggaagggctcagggaacccattatttttaagacagctgat
ggccttggaatacaaatgccagaccctgatttcagtgtgagtgatgtcaagttgtttgtt
ggtagtcgacgcattgtagacgtgatggatgtgaacacccagaagggaatcgaaatgtca
atggctcagtggcgacgctactatgagacaccaccatcagaaagagaaaaactctacaat
gtcatcagcctggagtttagccacaccaggctggagaatctggtcaaacgaccggcatcg
gtggaccttattgactgggtggacaacatgtggccccgccatctcaaggagagacagaga
gactccaccaacgccatcatagacatgcattatcccaaagtacagaagtattgtctcatg
agtgtacagggctgcttcacagattttcacattgactttggaggcacttcagtctggtac
cacatcctgcgaggaggaaaggtgttctggctgattccacccacaccacagaacctggag
atgtatgagaactgggttttatcaggaaaacagggagacatcttcttgggggacaagtgc
catgactgtcagaggatagaactcaagcagggcaacaccttcataatcccatcagggtgg
atccatgctgtgtacactccagaggatacattggtgtttggggggaatttcctccacagc
tttaacatccccatgcagctcaacatttacagcattgaggatcgcacacgggtgccagca
aagttccgctaccctttctactatgagatgtgctggtatgtcctagagagatacctttac
tgcctgaccaacatctcccacctcacccctgaattccaaaaatactctcttggcatagga
ctgactccagctgaccttgaaaccaatgatcacaccgggaacggcacgtccaatggagtt
gacagtgacactgagaaggcggaaatcatgttcaaggaagaagaaatcatagaagaagaa
gaagcaggtcaagttaccgcacctcagcacgtgctgacccccttcgagctggagggactg
tggaacctcttgggaaagctggaagagctgccggccaacaaaaagtgtgtccctgcaggc
atcaggaatgccgcagctctgctcgaggacatgaggactgttctgaaggagcataccaac
gataaccccaaattgtcctacactggagagcccattgtaaagtggcccaacaggccctca
tggtaccagcctcccactccccctccccctgtcttttaccgtcctcgcttgggcccccac
ttacacaagcctctgggtcagaggtccaccaaacgctcctccatctctgccctgaggcgc
aggcgggtaaggtgcaagcgctgttccgcttgctgcaggaaggagtgcggtacctgccag
tactgccacgacatgaggaagttcggtgggcctggacgcatgaagaagagctgtatcatg
aggcagtgtctagcgcctgcgttgccaaacacagctcgatgtgccatatgtggagagggt
gaatcagatgaatcaaatccaagccctcactcactcatggagtgctctgtctgctcgcag
attgcccatcgtcaatgcattaaggaacctggtgaggggaagatcaataaggatttgccc
agctgctgggaatgtcccaaatgttatcaaggcaaaggttcagcatcagagtcttccagc
gatgaggaaagtggagagtctgatggctcatcctccttgccaccgtccaaacttgcatac
cgggagggcattggtgtaggagaaggggtgagacgaaggacacgtaatagaccccaatcc
cgacccacagcaccaccaccttctcagaaactgttgctgcagcatcaacaaaatcgcaaa
agggcaagtgcgctggagctcagacttaagaagaggataaaactggagcgtagcaaactc
ttagtgaaacaatcatccctagatcgttctcccaggctgctgggttccagggcgctgtcc
cggctgcgctctccaaccagcagactatctcagggcagaggccgggcctccacctgggca
agtggcccaccttaccacagctctccaggagggactgggtccttccagcagcagcagtct
tccgtcagtctggtacttgagcccaagggagagccccgcagagggaggggaagaggggtg
aggctgcggggaggaggagcaggaagagggatcagaggtgatagacaccatggagacttg
gaggaggagagtgaggacagcagcagcagcagcaccaacagcagcagcagcagcgatgag
gaagaggagagggggcagaacagtgggaggggaggggataaagagaaccagccgcagtcg
aggcgaggaggacgagcagccaaagacggagatgaggaagggagcgaggtggcaaaccaa
aactgtgcggaggaggatgaggaggatgagatggagcaggacagtcaaacaggggacaag
gacggctcatatcttaaagtaacactccaaaggccaaccagggccaagcaggacccatca
gccattgtccccaaattagaggctattgcccctcaaactacttcttccacaatacacaac
cagactagagccctcgtcagacccccaattagaaatcgtggcccctgtcctgatcaacag
tcaattaggcacacacccccacacacacgcagtggacacacggacactcgcacctcccac
ccagagaggctggaggtctctaaaagaccgaggccaagcaggccagctaaactgagcaat
ggggcctcctgttcctcatcctccgaacttccccatctccgcatccctctgtctgccctg
caggagggcgggagcgagggagacagggagaacactggaagtgggccaggttgtgagagg
gaggtctgggtgtctgtcttccgctacttaagtcgagcagatctctgcgtctgcatggct
gtctgcaagaactggtacaaatggtgtttagacaagcggctctgggcgcggattgacctg
agcatcaagcgcactgttactcctcaggccctaacaggcatcataaagagacagcctgtc
acactcgacctctcttggaccaacatctctaaaaagcagctcaactggctcgttggccgt
ctgcctgggctgaaggatctgatgctggcaggctgttcctggtcatccatttcagctctc
tgctcctctggttgtcctcttctccgctctctggacctgcggtatgcagacggggtcaaa
gactctcagatcagggatctagtcagccctccagactgcgataaccgcagtcagttgcgt
accatgcagtgtttgcgacttgcaggcctggacatcagcgactccactctgcgcctggtg
atccggcacatgccccatttaacaaaactggacctctcccactgcaacagcctcactgac
cactccatcaacctgctgactgcagtgggctcatccacccgaaacacgcttacagaactc
aacctgggaggctgcagtaaactgacagacacgtgtctaaagtatctccgccgcctctct
tgcatctcgctgctcgacctgcgaggctgtaaaggtgtctcccgaaaggcctgtgaggcc
ttcatctctgagctgtcagtcaacacgctctactgcctatcagatgaaaaactgatccag
aggatatcctaa
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integrated database retrieval system
