Xiphias gladius (swordfish): 120788903 Help Entry 120788903         CDS       T07311                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism xgl  Xiphias gladius (swordfish) Pathway xgl04115   p53 signaling pathway xgl04145   Phagosome xgl04148   Efferocytosis xgl04350   TGF-beta signaling pathway xgl04510   Focal adhesion xgl04512   ECM-receptor interaction xgl04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:xgl00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     120788903 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     120788903 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     120788903 (thbs1b)    04148 Efferocytosis     120788903 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     120788903 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     120788903 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     120788903 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:xgl04131]     120788903 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:xgl00536]     120788903 (thbs1b) Membrane trafficking [BR:xgl04131]  Endocytosis   Phagocytosis    Opsonins     120788903 (thbs1b) Glycosaminoglycan binding proteins [BR:xgl00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    120788903 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C VWC2L_2nd EGF_3 Laminin_G_3 cEGF TSP1_ADAMTS EGF Motif Other DBs NCBI-GeneID:  120788903 NCBI-ProteinID:  XP_039981093 LinkDB All DBs Position LG4:7054415..7067795 Genome browser AA seq 1169 aa AA seqDB search MKLTGIFLLLMLWTCESARVAESRDDNSVYDLFELVQVPKGNHGVTLVKGDDPYSPAYKI LNPDLIPPVPESAFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKQDGSGPVFEVVS NGKANTLDIVFSTANKQQVVSIEDVDLATGQWKNITLFVQEDRAQLYAGCEEVDTAELDA PIQSILTQETPASAQLRVGKGAVKDRFKGVLQNVRFVFGTTLDAILRNKGCQSSMASDNM MLENLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLVGMFKELKGLGVVVKELSNELRQLTN ENKLIKNRIGIHSGVCIHNGIVHKNKDEWTVDDCTECTCQNSATVCRKISCPLIPCVNAT VPDGECCPRCGTLSDYAEGSWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTR DCYLQECDKRFKQDGGWSHWSPWSSCSVTCGSGVITHIRLCNSPIPQFGGKDCEGEGRQT EKCQMSPCPINGNWGPWSPWDTCTLTCGGGGQTRKRLCNDPAPKYGGKECVGEDKETQKC NKQACPIDGCLSNPCFAGAKCTSFPDGSWKCGKCPAGYTGNGIKCKDIDECKEVPDACFE FNGVHRCENTDPGYNCLPCPPRYSGPQPFGKGAEQAAASKQVCTPRNPCLDGSHDCNKNA RCNYLGHFADPMYRCECRPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL PNSGQEDYDKDGIGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNS NPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDMCDNCPLEHN PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDYDDDND GIPDEKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFGISETDFRQFQ MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNAVDFSGTFFINTERDDD YAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW HTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGHIRVVMYEGKKIMADSGSIYDK TYAGGRLGLFVFSQEMVYFSDLKYECRDA NT seq 3510 nt NT seq  +upstreamnt  +downstreamnt atgaagttgacagggatctttctgctattgatgctttggacctgcgagagtgcgagagtc gcagagagccgagacgacaatagcgtgtatgacttgtttgagctcgtccaagtccccaag ggaaaccacggggtcaccctggtgaaaggagacgacccgtacagccccgcctacaagatc ctcaacccggacctgatcccccctgtccccgagagcgcctttagggacctgatcgattcc atccatgccgagcgaggattcctcctcctgctcaacttcaagcagttcaagaggaccagg ggaagcctcctgaccgtggagaagcaggacggctccggacccgtgtttgaggtggtctcc aacggcaaggcgaacaccttggacatagttttctccaccgcgaacaagcaacaggtggtt tcaatcgaagacgtggatctggctacgggtcaatggaagaacatcaccttgttcgtgcag gaggaccgggcgcagctgtacgctggatgcgaggaggtggacaccgcggagctggacgcg cccatccagagcatcctgacgcaggagaccccagccagcgcgcagctccgggtcggcaag ggagcggtgaaagacaggttcaagggggtcctacaaaacgtgcggtttgtgtttggaaca acactggatgccatcctgcgcaacaaaggatgccagagctcgatggcgtctgacaacatg atgctggagaacctcaatggctcctcggccatcagaacggagtacactggacacaagact aaagacctgcagatggtctgtggcttctcctgcgaggacctggtcggcatgtttaaggag ctgaagggcctcggtgtggtggtcaaggagctgtccaatgaactccgacagctgacgaat gagaacaagctgattaaaaaccgcattggcattcacagcggcgtctgcatccacaacggc atcgtgcacaagaacaaagacgagtggaccgttgatgactgcaccgagtgcacttgccag aactctgctactgtgtgccgcaagatctcctgccccctgattccgtgtgttaatgccacc gttcctgatggggagtgttgcccccgctgcggaacactgagtgactatgcagagggtagc tggtcgccgtggtctgaatggacccattgttccgtgtcatgtgggcggggcatccagcag cgcgggcgctcctgcgaccgtatcaataacaactgtgagggcacctctgtgcagacccgc gactgctacctccaggagtgtgacaaacgcttcaagcaggacggcggctggagccattgg tcaccctggtcctcttgctccgtcacctgtggttctggtgtcatcacgcatatccgcctc tgcaactcccccatcccccagtttggaggcaaggactgcgagggagagggccgacaaact gagaagtgtcagatgtctccgtgccccatcaatggcaactgggggccctggtcaccatgg gatacctgcactctcacctgcggaggtggtggccagactcgtaaacgcctgtgcaacgac cctgcaccaaaatacggtggcaaagagtgtgttggtgaagacaaagagacccaaaagtgc aacaagcaagcctgccccattgatgggtgcctgtccaacccctgctttgctggagccaag tgcaccagtttccccgatggttcatggaaatgtggaaaatgtccagctggctacactggc aatgggatcaagtgtaaagatattgatgagtgcaaggaggtcccagatgcttgctttgaa tttaatggcgtgcaccgttgtgagaacacagaccctggctacaattgtctgccctgccct cctcgctactcaggaccccagccctttggcaaaggtgcggagcaggctgctgctagtaaa caggtgtgcacaccacgtaatccctgcctcgatggaagccacgactgcaacaaaaatgcc cgttgcaactacctcggacactttgctgatcccatgtaccgctgtgagtgcaggcccggt tatgctggcaacggccatatctgcggagaagacacagatctggatggatggcccaacgct gacttggtttgtgtggagaatgccacctaccactgcaaaaaggacaactgccccaacctc cctaactctgggcaggaagattacgataaggatggcattggagatgcttgtgacaatgat gacgacaatgatggcattcctgatgatagggacaattgtccattcgtctacaaccccagg cagtatgattatgaccgtgatgatgtgggtgaccgctgtgataactgcccctacaatagt aacccagaccagacagacacagacaacaatggagagggagatgcctgtgctgtggacatt gacggagatggtatactaaatgagaaggacaactgtccctatgtgtacaacgttgaccag agagacacagatctggatggagtgggagacatgtgcgataactgccctctggaacataat cctgatcaggtggactcagatgatgaccgtgtgggagacaagtgtgacagcaaccaggac atcgatgaggacggacatcagaacaatcttgacaactgcccgtacatccccaacgccaac caggctgaccatgacaaggacggcaagggagacgcctgtgactatgatgatgacaacgat ggcatccctgatgaaaaggacaactgcagactggccttcaacccagaccaactggactct gatggtgatggccgtggagacgcttgcaaagatgactttgaccaagacaatgtgcctgac atctatgacgtgtgtccagagaactttggcattagtgagacagacttccgccagttccag atggttcctttggaccccaaaggcacctcccagattgatcctaactgggttgtccgccat cagggcaaagagctggttcagactgtcaactgcgaccctggcattgctgttgggtaccac gagttcaatgcagtggacttcagtgggactttcttcatcaacacagagagggatgatgat tacgccggctttgtgtttggctaccagtccagttccaggttctatgtggtgatgtggaag cagattacgcagacctactggtcgaataaacccaccaaggctcagggatactctggcctg tccattaaagtggttaactccaccaccggcccgggagagcacctcagaaacgccctctgg cacaccgggaatacccctggacaggtccgcactctctggcatgaccctaagaatgttgga tggaaagacttcactgcctacagatggcatctgatccacagaccaagaacaggacatatt agagttgtgatgtacgagggcaaaaagataatggcagattctggtagcatctatgacaag acatatgcaggcggcaggctaggtctttttgtcttctcacaagagatggtatacttctca gatctcaagtatgaatgcagagatgcataa

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