Xiphias gladius (swordfish): 120789968
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Entry
120789968 CDS
T07311
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xgl03036
]
120789968 (smchd1)
03400 DNA repair and recombination proteins [BR:
xgl03400
]
120789968 (smchd1)
Chromosome and associated proteins [BR:
xgl03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
120789968 (smchd1)
DNA repair and recombination proteins [BR:
xgl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
120789968 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
DUF237
Motif
Other DBs
NCBI-GeneID:
120789968
NCBI-ProteinID:
XP_039983128
LinkDB
All DBs
Position
LG5:16156472..16183496
Genome browser
AA seq
1971 aa
AA seq
DB search
MFNTGVQRPPAASSREPRRVRVHDCRGENKEVTGTFLETSGLNFNDFLRILHREFSVPSH
ERFVLATTDRTVLDFDKFEELQDGSTLYLLQQEDQALPMAMEERIMFIPHYDTLIQSGMY
EYYASEGQNSLPYALAELIDNALSATAKNTGMRTIELKLLFDESHGKPALIVSDNGCGMN
SKQLNNWAVYRLSKFTRENSTFVRQEGYVRPDPVPRSLNSDISYFGVGGKQAVFYIGDST
RMISKPVGSPDVHELVLSKEDFERKERNKEDIYSGIIRNRKPGDSSHVENDDERFLHALI
AEEPGKESFTAVVITGILPEHVTFLKHDFKAWTRELAHIYHYYIHGVNGNEMSWSPTNSD
RLPNIDIRVTLWEKPFRCPRVMNLREVDDDMQTLYINSAVDTFEFKANPGLDLGTVEGVI
RYHPFLYDKETYPEDPSAVQAPLDDEDDNNEPGVRYQARGKRPIFECFWNGRLIPYTRIS
ELDWCTWPVKGAKVPQECYSRFSGVMFTDDRFKVSTNKLTFMDLELKLKNKDTIFTRIVN
GQEKRSNIQREFMEWLKNCHEKLDKQVKFLGFRKSIERMDVPTKKMKNPWATFSSIEWDG
KIYKTGQLVKSQKTQPILHGTVVQFLLYGDHAEDVFAAGGQVEVSLEPKALYDNTKIIPI
SKIDRTVTDESIEKNIENVLAKLPDMLKVDWPDGKPWTENGVFAAGTPLGALKIEILNKK
GESISRMPTVGQGTVRKLSVKLTLVKHGPKKNEEILAFVAQHSAKWGIWFKKIDNLTNPG
EYTLFLNTLLNESNATVFGGRELPSYKLKFTMKEGSGESFVMGSVSSTLHVGVPFDIPLQ
LKDRYGNSAMPLRNLQPLLKSSDMDLSYEAVDISGNKFTIKGVKARGKVLNYQQSKTYDL
KVILPGLKKNTQTIKISLLPGNPHVLHVKTEDDPIIVENGNPARFNIEIHDEAGNITAHP
KQIVHSQVQGLPLATIDCSSTGAGQLVTKPLNLKIIRGEPQKLKVQFWMPSQSSIASVVR
ELKVMPSTRVSLIELYSRDVENLVLKNNEKIEWPAGGSLENLFYKLYDETGREVPLTAEI
VSMIKVNWKGDVNLEDLVQGKLPNVQVPTKVQEEPFYQVSYHDQSVSISFTVVPCPDEPK
RLKATLLQNTLKLGEMLSGNINLQLLDQYDNATKTLTSNCVKHMTVEAEGLDKSAVAFIW
QESNSSVEVTGIRFQCGTIGIREMFFTYLSYAESVIVKVTAGDPAQLKLVSGPKQPLQVL
NDHSIPTPFIIQLSDKLGNPSPYQRVVVDIKSSPPALKVTTTVTSEPANPEGKAFFTVHR
VSGPKGCYQLEFNGSFNNKPISGPSVNITVLPDPNKPVSLSVDYDTTAKFPAGGTFPVFS
VTVVSDEGSLMTSLNPAAASMLLWEGGPSGETPPQTATELKCSKPMENERKDCFYFRDKE
IPKRAGKHTIQFSLRVDKTKLLFSKQIIINVVANQPVKLRPDSQPQPPVLSCCKDIANRT
LVKNMTLRIVDSYGNPAGQDLEGNVVVSIMSSSDDSNKNLPLFEGKINRIPISFVEGKVR
ITRLAIMENSPGEDGGAYTLLFKPEVSMVPTPLAPFELPFHFYNDELTQQKMSELLKKKN
KLTTDVAVLEDFFTDFSKLLHLLREQYLTASAKEDDLRNVLIKRNVKIAQPVSIPDIDRL
RNEKTAEADGILKMLRRVCSIHDNFRGQQDVLGMVGHLAYVQDDAAARVISWHIKGDMDC
VITKTTEAARGIYDITGGRQQVMALNSVYVQPLNRPLPHIRNGHKLFDPPGNPVYARELL
IYPHDKESCDIVFKNILRDTILIDDLDSANNYRRAVVQRKTHCPTILTREGDRISSMGKF
GGAQNKAPPINTLQVFGAPPPQHYHTLKEEIDLLSQYQTALQKKERTEKEHDDHSEYMKS
PELLKKKKDMEEKNKQLEEIGRQITLKSIRPVKRGMENAGEPSGIITKRAK
NT seq
5916 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacacgggcgttcagcgaccccctgctgcgtcctctcgagaaccgaggcgggtc
cgtgttcatgactgccgcggcgaaaataaagaggttaccggaacatttctggaaacaagt
ggtttgaacttcaatgactttctgcgaattctgcacagggaattttcagtcccttcacat
gaaagatttgtgttggccacaacagacagaactgtccttgattttgacaaatttgaggag
cttcaggatggcagtaccctctacttgctgcaacaggaggaccaagctctgccaatggca
atggaggagcgcatcatgtttatccctcattatgatacgttaatccagagtggcatgtat
gagtactatgctagtgagggccagaactcattaccctacgcacttgctgagctcattgac
aacgctctgtcggccacagctaaaaacacaggaatgaggacaatagagttaaaattgctt
tttgatgaaagccatgggaaacctgcattgattgtctcagataacggatgtggaatgaac
tctaagcagctcaataactgggcagtgtacagactctctaaatttaccagggaaaacagc
acatttgtgaggcaagaggggtatgttcggcctgatcctgtccctcgtagtctcaacagt
gatatatcctactttggagttggaggaaaacaggctgttttctacattggagactcaacc
aggatgatcagcaaaccagtaggctccccagatgttcatgagctggttctgtcgaaagag
gattttgagagaaaagagaggaacaaagaggatatttacagtgggatcatcagaaacagg
aagcccggtgactcttcacatgtggaaaatgacgatgagcgcttcctccatgccttaatt
gctgaggaacctgggaaggaaagcttcacagccgtggtcattacgggaatcctgcctgag
catgtcacctttttgaaacatgatttcaaagcgtggaccagagagctagctcacatatat
cactattacatccatggagtcaatggaaatgaaatgagttggagtcctacaaactcagat
cgtctccctaacattgacattcgggttaccttgtgggaaaagcctttcagatgtccccgt
gtaatgaatctcagggaagttgatgatgacatgcagactctgtacataaattctgctgta
gacacatttgagtttaaggccaaccctggattagaccttggcacagtggagggagtcatt
cggtatcatcccttcctttatgacaaggagacataccctgaagacccgtctgctgtgcaa
gcacctcttgatgatgaagatgacaataatgagcctggagtccgatatcaggcaagagga
aagaggccaatctttgagtgtttctggaatggacggctgataccttacaccagaatatct
gagcttgactggtgtacctggccggttaaaggagcaaaggtccctcaagagtgttacagt
cggttttcaggggtgatgttcactgacgacagattcaaggtcagcacgaacaagctcacc
ttcatggacctggagctgaaattgaagaacaaggacactatcttcacacgcattgttaac
ggacaggaaaaaagaagtaacattcagagggagttcatggagtggctaaaaaactgtcac
gagaagttggacaagcaagtgaagttcctgggattcaggaagagcatagaacgaatggat
gtgcccactaagaaaatgaagaatccctgggcgacgttctcttccattgaatgggacggc
aaaatatacaaaacaggccaacttgtgaaatctcagaaaacacagcccattctgcatggt
accgtagttcagtttttgctatatggagatcatgcggaagatgtctttgccgcaggagga
caggttgaagtgtctctggaacccaaagcactttatgacaacactaagatcatacccatt
tccaagatagacaggacagtcactgatgaatccatcgagaaaaacattgaaaatgtcctg
gccaagcttccagatatgctaaaagtggactggccagatggtaaaccctggacagagaat
ggtgtgtttgcagctgggactccgttaggggcactcaaaatcgaaattctgaacaagaag
ggagagtcgatatccaggatgccaacagtgggccaggggacagtgagaaaactgagtgtc
aagctcacattagttaagcacggtcctaaaaaaaatgaagagattttagcttttgttgcc
cagcattcagcaaagtggggtatctggttcaaaaaaattgacaatctgaccaacccaggg
gagtatacactgtttctgaacaccttgctaaatgaaagtaatgccaccgtctttggaggc
agagagcttccaagctacaaactcaagttcaccatgaaagagggtagtggtgagagtttc
gttatgggttctgtgagctccactcttcatgtaggggtgccattcgacattcctcttcag
ctaaaagatcgttatggcaactcagcgatgcctcttcgcaatctccagcctttactcaaa
tccagtgacatggatctgagttatgaagcagtggacatcagtggcaacaagttcaccata
aaaggtgtcaaagcaagaggaaaagtactgaattaccaacaatccaagacatatgacttg
aaagtgatcctgccaggcctgaaaaaaaacacacagactatcaagatcagtcttctgcct
ggtaatccacatgtcctccatgtgaagacagaagatgacccaatcatagtagagaatgga
aaccctgccaggtttaacattgaaattcatgatgaggctggaaacatcaccgctcacccc
aaacagatagttcactcccaggttcaggggcttcctctggcaacaattgactgcagcagc
actggagcaggacagcttgtgacaaagcccttaaacctgaaaataatcaggggagaacca
caaaagctcaaagttcagttttggatgcctagtcagagtagcatagcatcggttgtgagg
gagctgaaggtgatgcccagcacaagggtctccttgatagagctctacagtcgagatgtt
gagaatctggtgctgaagaacaacgaaaagatagaatggccggccggaggctcactggag
aacctgttctataaactttatgatgagactggcagagaggtacctctcaccgctgaaata
gtctctatgatcaaggttaactggaaaggagatgtaaatctggaagatttggtgcagggt
aagctgcctaatgtacaggtgcccacaaaggtgcaggaagagcccttctaccaggtgtcc
taccatgaccagagtgtgtctatctcctttactgtagtaccttgtccagatgaaccaaaa
cggctaaaagcaactctgctccaaaatacattgaagctgggtgaaatgctatctggaaac
atcaacttacagcttttggaccagtatgacaatgcaaccaagacgctaacctctaactgt
gtgaaacacatgactgtggaagctgaaggtctggacaaatcggccgtcgcctttatttgg
caggagagcaacagttctgtcgaggtgacaggaatacgcttccagtgtgggacaattggc
atcagagagatgttcttcacttacctgagctatgcggagagtgtcatagttaaagtgacc
gctggagaccctgcacagcttaaactagtcagtgggcctaagcagcctttgcaggtctta
aatgaccacagcatccccacacctttcatcatccagctgtccgataagttgggaaaccca
tctccataccaaagggttgtggtggatataaagtcttcaccaccagcactgaaggtgacg
acaaccgttacttcagaaccagcaaacccagaaggaaaagcctttttcactgttcataga
gtgagcgggccaaaggggtgctatcagctggagtttaatggttccttcaacaacaaaccc
atctctggcccatcagtgaatataactgttttacctgatcccaacaaacctgtcagcctg
tcagtggactacgacaccactgccaagtttccggctggaggcaccttcccagtgttctca
gtgaccgtggtgtctgatgaaggtagcctgatgacaagtttaaacccagctgctgcatcc
atgttgctgtgggagggagggccatcaggagaaacacctccacaaacagccactgagctg
aagtgtagtaagcccatggagaatgaaaggaaagactgtttttactttagagataaagaa
atcccaaaacgtgctggaaagcataccatccagttttctctgcgcgtcgacaaaacaaaa
ctcctgttcagcaaacagattattataaatgtggtggctaatcagcctgtcaaactgaga
cccgactcacagccacaacccccagtcctttcctgctgtaaggacattgctaaccgaacc
ttggtgaagaatatgactctcaggatagtggactcatatggaaacccagcggggcaggac
ctggaagggaatgtggtcgtttctataatgagctctagtgatgatagcaacaaaaacctc
cctctgtttgaaggcaaaatcaacagaattcctatcagctttgtagagggaaaggtccgc
atcactaggttggctatcatggagaatagccctggtgaggatggtggtgcatacaccctc
ctcttcaaacctgaagtgtccatggttcccacgcccctggccccttttgagctccccttc
catttttacaatgatgaactgacccaacagaaaatgtcagagctgttaaagaagaaaaat
aagctcactactgatgttgctgtacttgaagatttctttactgattttagtaaactcctt
catttgctgagagaacaatacctgactgctagtgccaaagaggatgaccttagaaatgtc
ctgatcaaaaggaacgtgaaaatagcacaacctgtatctatcccagatattgacagactt
cgaaatgagaagactgcagaagctgatgggattctgaaaatgcttagaagagtctgctcc
atccatgacaacttcagggggcagcaggatgttttgggaatggttggtcacttggcttat
gtgcaggatgatgctgctgcaagagttatctcctggcacatcaagggtgacatggattgt
gtcatcaccaaaacaacagaagcagcacgggggatctacgacatcacggggggccggcag
caagtcatggcccttaacagcgtgtatgtgcaaccattgaacagaccactgccacacata
agaaacggccacaagctctttgatccccctgggaacccagtctatgccagagagctcctg
atttacccccacgacaaggagagctgtgacatcgtgtttaaaaacatcctcagagacact
attctgattgatgacctggactctgcaaacaactacagacgggcagtggtgcagagaaag
acacattgtcccaccatactgaccagggagggcgacaggatcagttccatgggcaagttt
ggaggcgcacagaacaaagccccaccgattaacacattacaagtgtttggagccccgccc
ccacagcattaccacacccttaaggaagaaatagacctactcagtcagtaccagacagct
ctgcaaaagaaagagaggacggaaaaggagcatgatgatcactcagaatacatgaagtct
cctgaattactgaaaaagaaaaaggatatggaggagaaaaacaagcagctggaagagatt
ggaagacaaattacgttgaaatccatcagaccagtgaaacggggtatggagaatgctggt
gagccttctggcatcattacaaaaagagcaaaatag
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