KEGG   Xiphias gladius (swordfish): 120801555
Entry
120801555         CDS       T07311                                 
Symbol
apaf1
Name
(RefSeq) apoptotic protease-activating factor 1
  KO
K02084  apoptotic protease-activating factor
Organism
xgl  Xiphias gladius (swordfish)
Pathway
xgl04115  p53 signaling pathway
xgl04210  Apoptosis
xgl05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:xgl00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    120801555 (apaf1)
   04115 p53 signaling pathway
    120801555 (apaf1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    120801555 (apaf1)
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 APAF1_C NB-ARC EIF3I WD40_MABP1-WDR62_2nd WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 APAF-1-like_WHD Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_EML WDR90_beta-prop_4th Beta-prop_WDR75_1st CARD NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_TEP1_C RMC1_N PEP5_VPS11_N Beta-prop_EIPR1 Beta-prop_NWD2_C Beta-prop_Vps41 Ge1_WD40 Beta-prop_WDR35_TULP_N eIF2A WD40_like CARD_2 Beta-prop_VPS8 Beta-prop_SPT8 WDR54 Beta-prop_IP5PC_F AAA_16 NACHT Dark_WHD nSTAND1 AAA_22
Other DBs
NCBI-GeneID: 120801555
NCBI-ProteinID: XP_040004619
LinkDB
Position
LG2:complement(7284997..7325537)
AA seq 1259 aa
MALEEGARSCLLRFRHRLEQDIKPPYLMDHLISDGVMSVDEEERIRAQPTRKEQATALLE
LLLRKDNFAYISFYNALVKEGYDDLANLLHDDLPRISPNAYKSSSDGPSSSVQMVLSEGG
VPQRPVVFVSRPELLNRVREKLYQLQKEPGWVTVFGMAGSGKSILAAEAVRHQGVIEDCF
PGGIHWLSIGQLDKPDLLVKIQSLCFRLEQSLDSQSLHRTPNSLDEAKERLRFLMLRRFP
RSLLILDDIWDSTVLKTFDIQCRILLTTRNRSVTDSVSGAKYEVEVESGLDENKGLEILA
LYTKTKLQGLPEEARSIVRECKGSPLVVSLIGALLKEKPNRWHYYLRQLQQKQFKRIRKS
SSYDYDALDQAMAASIEVLPDEHRELYKDLTVLEKDIKIPAKVLSVLWDLEPEEVEDILE
EFVNKSLLFVDSNNKPYLYYLHDLQLDFLVEQNRTQLESLHAKVVRQYQYHYRDGPPISG
DEECLYWIRYLTYHMAKANLSQELYSLMFSLDWVSIKAQIMGPAHLINDYVEYGPILDKE
HSDVRSQFQEFLSLNGHRLEQRPFPDVVQLALSQPHTSEVYRQALLQAQDRVSTGGLYFD
WLNKSSVKCLSRLVIHPHQGSIYSACFSHDGAKIATCGASKTLKVFKSTSGEKLKEIQAH
DDEVLCCAFSPDDRLLATCSSDRKVKVWNVDRAMLLRVFAEEHEEQVNHCQFTNTRRHLL
LATCSNDKFLNVKVWNLNKPSSQNTMFGHFEPVNHCCFSPDDTYVSTSSNDGTVKLFQVS
SANEWKTINVSSMFTESDEEVLVKCSTWTADGKRIICAARNAVLVFDVETSEMLLEIRTN
RLSTVQYCHACPTSNLLAIAFSNYAVELWDLEADKKMADCSGHLSWVQRVQFSLDGSQLL
SCSDDQTVRLWETKKVHTTSAVCLKRDSDVLFNDEDIIVSAADNCNRLQVRDGRMGSVLF
QSEEKSSRIRCTCMCRQPSVVALGQEDGTVQVLEVPSGKLLATLLGHTKTVLHCQFSQNG
GTLITSSEDTTIRVWRWQSGEGRVLQGHKEQVRCFSLLSNSPADTRLLSWSFDGTVKVWD
IESGEKLQDIEAHRGAILSCHVSPDGCFFATTSADKTAKLWHCETWQCVHTLSNHQDCVR
SCRFSWDSRRLATGDDNGEIRLWSVKEGSLLKICSREGKDGMDSLHGGWVTDLHFSPDNS
LLVSTGGYIKWWDVEKGEALQTFYPTGSALKRIHVSSDFSTFVTIDSIGILYILQKVVR
NT seq 3780 nt   +upstreamnt  +downstreamnt
atggcgctggaggaaggggcccggagctgtctgctgcgcttccgccacagactggaacag
gacatcaagcccccctacctgatggaccacttgatcagtgatggtgtgatgagtgtggat
gaggaggagaggatcagggctcagcccaccaggaaggaacaggctacggctctgctggag
ctgctgctgaggaaggacaactttgcctacatctccttctacaacgccctggtcaaggag
ggctatgatgatttggccaatctgcttcatgacgatctaccgcggatctcaccaaatgca
tataagagctcctctgatggcccctcatcttctgtccagatggtgctgagtgaaggtggt
gtaccacagaggcccgtggtgtttgtcagccgaccggagcttttgaaccgggtcagagag
aaactctaccagctacagaaggagcctggctgggtcactgtcttcgggatggccggctcg
ggcaaatctatcctggctgcagaggctgtcagacaccaaggggtcatcgaagactgcttt
cctggaggcatccactggttgtccattggccaactggacaaaccagacctgttggtgaag
atccagtcattgtgtttccgtttggagcagagcctagattcccagtccctccaccggacc
cccaactctctcgatgaagccaaggagcgtctgcgctttctcatgctgcgcagatttccc
agatctctgctgattctagatgacatctgggacagtacagtgctgaagacgtttgatatc
caatgtcgtatacttctaaccaccagaaatagaagcgttactgattcagttagtggtgct
aaatatgaggtggaagtggaaagtggtctggatgaaaacaaaggactggagatcctcgct
ctgtacactaaaactaaactgcaaggactacccgaggaagctcgcagcattgtcagagag
tgtaaaggctcccctctggtggtgtccttgatcggggctctgctcaaagagaaacccaac
cggtggcattactacctccgccagctgcagcagaagcagttcaagcgtatacggaaatca
tcgtcttatgactatgacgccctggaccaggccatggctgcgagcattgaggtcctgcct
gatgaacatcgagagctctacaaggacctcactgtgctagaaaaagacattaaaatccct
gccaaggtgctgtctgttctgtgggaccttgagccggaggaggtggaggacattctcgag
gagtttgtcaacaaatctctgctttttgtggacagtaacaataaaccctacctgtattac
ctccatgaccttcagctggacttcctggtggagcagaaccgcacccagctcgagagcctt
cacgctaaagtggtacgtcagtatcagtatcactacagagatggtcctcccatctcagga
gatgaggaatgtctttattggatcagatatttgacctaccacatggccaaagccaacctt
tctcaggagctctactccctcatgttttctctggattgggtcagcatcaaggcccagata
atgggtccagcccacctcatcaatgactatgtggagtacggaccaattctggacaaagag
cacagtgacgtgcgcagtcagttccaggagtttctgtccctgaacggccaccggctggaa
cagcgtcctttccctgatgtggtgcagcttgccttgtctcagccacacacctccgaggtc
tacagacaggctctgctgcaggcacaggaccgggtcagcacagggggactctactttgac
tggctgaataagagcagtgtgaagtgtctgtcccgtctggtgatccacccccaccagggc
tccatctactctgcctgcttctcccacgatggagccaagatcgccacctgtggagccagc
aagacgctcaaggtgtttaaaagcacctcaggcgagaagctcaaagagatccaggcccac
gacgatgaggtgctctgctgtgccttctcccccgacgaccgtctcctagcaacctgctcc
agtgacaggaaagtaaaagtgtggaatgtggaccgagccatgctgctgagggtctttgcg
gaggagcacgaagagcaggtcaatcactgtcagtttacaaacacgagacgacacctcctc
ctggccacctgctccaacgacaagttcttgaatgtcaaggtgtggaacctcaacaagcca
tcctcccagaacaccatgtttggccactttgagccagtcaaccactgttgtttctccccc
gatgacacctatgtgtccacttcttccaacgacggcactgttaagctttttcaggtgtca
tctgccaatgagtggaagacgatcaacgtgagcagcatgtttacagagagcgatgaagag
gtccttgtcaagtgcagcacctggaccgccgatggcaaacgtatcatatgcgctgccagg
aacgctgttttggtgtttgatgtggagacgtcggagatgttgttggagatcagaacgaat
cgtctgagcacagtgcaatactgtcacgcctgtcctaccagtaacttgctggccattgca
ttctcaaactacgctgtagagctgtgggacctggaggccgataaaaagatggctgactgc
agtgggcacctgagttgggtccagcgtgttcagttctctcttgacggctcacagctgctc
tcctgctctgacgaccagactgtcaggctatgggaaactaagaaggttcacaccacctca
gctgtctgcctgaaaagagactctgacgttctcttcaatgatgaagatatcattgtatca
gctgcggacaactgcaacagactgcaggtacgtgatggcaggatgggatcagtgctgttc
cagtcagaagagaagtcgtccaggatccggtgtacctgtatgtgcaggcagccctctgtg
gtggctctgggccaagaggatggcactgtacaggtgttggaggtgccctctgggaagctt
ctggccactctgctgggacatacaaagacggtgctgcactgccagttcagccagaacggc
ggcacacttatcacatcctccgaggacaccaccattagggtgtggaggtggcaatctggg
gagggcagagtacttcagggacacaaagagcaggtcagatgcttctctctgctctccaac
tcgccggccgacacaagactgctgtcctggtccttcgacggtactgtcaaggtgtgggac
atagaaagtggagagaagctacaggacatcgaggcgcatcggggagccattctgtcttgt
catgtctcaccagatggatgcttcttcgccaccacctctgctgacaagactgctaagttg
tggcactgtgagacctggcagtgtgtccacacactgagcaaccaccaagactgtgtccga
agctgccgattctcctgggacagccgacgcctcgcaactggagatgacaacggagagatc
cggctgtggagtgtcaaggaaggatccttgctgaagatttgttcgcgggaggggaaagac
ggtatggactcactccacggaggctgggtgactgacctgcacttctccccagacaactct
cttctggtctcgactggcggctatatcaagtggtgggatgtggagaaaggcgaggccctg
cagaccttctatccgacgggaagcgctttgaagagaatccacgtatcgtccgacttctcc
accttcgtcaccatcgacagcatcggcatcctctacatcctccagaaggtggtgcgatga

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