Xiphias gladius (swordfish): 120805096
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Entry
120805096 CDS
T07311
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
120805096 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xgl03000
]
120805096 (kdm2ba)
04121 Ubiquitin system [BR:
xgl04121
]
120805096 (kdm2ba)
03036 Chromosome and associated proteins [BR:
xgl03036
]
120805096 (kdm2ba)
Enzymes [BR:
xgl01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
120805096 (kdm2ba)
Transcription factors [BR:
xgl03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
120805096 (kdm2ba)
Ubiquitin system [BR:
xgl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
120805096 (kdm2ba)
Chromosome and associated proteins [BR:
xgl03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
120805096 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
120805096 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
PHD
LRR_4
Rubredoxin
Motif
Other DBs
NCBI-GeneID:
120805096
NCBI-ProteinID:
XP_040010897
LinkDB
All DBs
Position
LG19:complement(21084722..21097875)
Genome browser
AA seq
780 aa
AA seq
DB search
MALSLSGDEEEYDSESEQQRAANRPKPKMGTTSAVKLPSNRSSSGARRRRTRCRKCEACL
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCKEAGKEDTLEEEEDK
FNFMLMECSICNEIVHPNCLKVSDAPGVVNDELPNCWECPKCNHAGKSGKVLKQKRGPGF
KYASNLPGSLLREQKPVKEEGDASSAAKRRPDREETPRYRPEESLHRQPPLLSPNSLPRP
RPEDKLRKKRKLFDDDEEEDLSVRKKEKSDDPYLSKLLHQIKTEEEDEDVYEEEDEEGRE
PHFRNSVDRKGRFGDAEEEGDDKDSKNEILNPCIKTPVGDSDQSHCSSPQAGPSSEGGSE
TQEKGPRPKARRKRRLPNRELSRELSKALNQEIQKTEDCLANENRQPLKVEPETENEEPK
RLFRNSNELGDQRPHLKTKEMNGTPWELRHFYPSQITPLGFNRSTPTNRPVPPRSPPKCV
QMERHVIRPPPISPPPDRLPLKDGKTHVIQREVWMKIFRYLTHQELCVCMRVCKTWNRWC
CDKRLWTKIDLNRCTSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRVLKL
SGCSWAAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRNVE
NLRLAGLDITDTSLRLISRQMPLLSRLDLSYCNHINDQSVNLLTAAGTTTRDSLTEINLS
VCNRVTDHSLNFFKRCGSICQIDLRFCKQVTKTACERFIAEMSVSVPFRLKEDKLLQKAS
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcattgagcggagacgaagaggagtatgattcagagtctgagcagcagcgg
gcggccaaccggccgaagcccaagatggggacgacgtcagccgttaagctgccgtccaac
cgcagctcgtctggtgccagacgcaggaggacacgctgccgaaagtgcgaggcgtgcctc
cgaaccgagtgtggagagtgtcacttctgcaaggacatgaagaagttcggagggccgggg
cgcatgaagcagtcctgcatcatgagacaatgcattgcgcccgtcctgccacacacggcc
gtgtgtgtggtgtgtaaagaggcagggaaggaggacacactggaggaagaggaggacaag
ttcaactttatgctgatggagtgctctatctgcaacgagatcgtccatcccaactgcctc
aaggtgagcgacgccccaggagtggtgaacgatgaactccctaactgctgggaatgtccc
aaatgcaaccatgctgggaaaagtggaaaagtattgaagcaaaaaaggggtccaggcttc
aagtatgcctccaacctccctggctctctgctgagggaacagaagcctgtgaaggaggag
ggagatgcttcttctgcagccaagaggagaccagacagagaggagactcccaggtacaga
cccgaggagtctctccaccgacagccaccactgctctcccccaacagcctgcccagaccc
aggcctgaggacaaactgaggaagaagaggaagctgtttgatgatgatgaggaagaggat
ctcagtgtgaggaagaaggaaaagtcagatgatccttatttatccaaacttctgcaccaa
ataaagacagaagaggaagatgaagatgtatatgaggaggaggatgaagaaggaagggag
cctcacttccgaaatagtgtagacaggaaagggcgtttcggagacgctgaagaagaaggg
gatgacaaggactccaagaatgaaattttgaatccgtgcattaaaacacctgttggagac
agtgaccagtctcactgcagctctccgcaggctggccccagcagtgagggcggaagcgag
acccaggaaaaaggtccgcgtccaaaagctcgccgtaagcgccgtttacctaacagggag
cttagccgggaactgagcaaagcactgaaccaggaaattcaaaagacggaggactgcctg
gccaacgagaatcgccaacccctcaaggtagagccggagacagaaaacgaggaacccaag
aggttgttccgcaacagcaatgaactgggggatcagaggccccacctcaagaccaaagag
atgaatgggaccccgtgggagctgcggcacttctacccaagtcagatcactccgctgggc
ttcaacaggagcaccccaaccaaccggccggtgcccccgcgctccccacccaagtgtgtc
caaatggagcggcacgtcattcgcccccccccaataagcccacctcctgacagactgcct
ctaaaagatggtaaaacgcacgtcatacagcgcgaggtctggatgaagatctttcgctat
ctcacacaccaggagctgtgtgtctgcatgagagtttgcaagacgtggaacagatggtgt
tgtgataagagactttggacaaagatcgacctgaaccgctgcacctccatcactccactc
atgctaagcgggatcatccgccgacagccagtttccctagacctcagctggaccaacata
tccaagaaacaattaagctggcttattaatagattaccaggtctgcgagtgttaaagtta
tcggggtgttcttgggctgctgtatctgcactctgcacctccagctgccctctgctgcgc
accctggatgtccagtgggtggagggacttaaagacgcacagatgagggacctcctctca
ccccccacagacaacagaccaggtcaactggataaccgctgcaagttgcggaatgtggag
aacctgcggctagcggggctggacatcaccgacacgtctttacgtctcatcagtcggcag
atgcctttgctgtccaggctggacctgagctactgcaaccatatcaacgaccagtcagtc
aacctactgacagcagcagggaccacgaccagagactctcttacagaaatcaacctgtct
gtttgtaaccgggtcacagaccattccctaaactttttcaagcgatgtggaagcatctgt
cagatagaccttcgcttctgcaagcaggtgaccaagactgcctgcgaaaggttcatcgca
gagatgtctgtgagcgtaccatttagactgaaagaggacaaactgctgcagaaggcaagc
tag
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