Xiphias gladius (swordfish): 120805096
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Entry
120805096 CDS
T07311
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
120805096 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xgl03000
]
120805096 (kdm2ba)
04121 Ubiquitin system [BR:
xgl04121
]
120805096 (kdm2ba)
03036 Chromosome and associated proteins [BR:
xgl03036
]
120805096 (kdm2ba)
Enzymes [BR:
xgl01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
120805096 (kdm2ba)
Transcription factors [BR:
xgl03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
120805096 (kdm2ba)
Ubiquitin system [BR:
xgl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
120805096 (kdm2ba)
Chromosome and associated proteins [BR:
xgl03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
120805096 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
120805096 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
LRR_FBXL15
LRR_SKP2
PHD
LRR_4
Rubredoxin
Motif
Other DBs
NCBI-GeneID:
120805096
NCBI-ProteinID:
XP_040010897
LinkDB
All DBs
Position
LG19
Genome browser
AA seq
780 aa
AA seq
DB search
MALSLSGDEEEYDSESEQQRAANRPKPKMGTTSAVKLPSNRSSSGARRRRTRCRKCEACL
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCKEAGKEDTLEEEEDK
FNFMLMECSICNEIVHPNCLKVSDAPGVVNDELPNCWECPKCNHAGKSGKVLKQKRGPGF
KYASNLPGSLLREQKPVKEEGDASSAAKRRPDREETPRYRPEESLHRQPPLLSPNSLPRP
RPEDKLRKKRKLFDDDEEEDLSVRKKEKSDDPYLSKLLHQIKTEEEDEDVYEEEDEEGRE
PHFRNSVDRKGRFGDAEEEGDDKDSKNEILNPCIKTPVGDSDQSHCSSPQAGPSSEGGSE
TQEKGPRPKARRKRRLPNRELSRELSKALNQEIQKTEDCLANENRQPLKVEPETENEEPK
RLFRNSNELGDQRPHLKTKEMNGTPWELRHFYPSQITPLGFNRSTPTNRPVPPRSPPKCV
QMERHVIRPPPISPPPDRLPLKDGKTHVIQREVWMKIFRYLTHQELCVCMRVCKTWNRWC
CDKRLWTKIDLNRCTSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRVLKL
SGCSWAAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRNVE
NLRLAGLDITDTSLRLISRQMPLLSRLDLSYCNHINDQSVNLLTAAGTTTRDSLTEINLS
VCNRVTDHSLNFFKRCGSICQIDLRFCKQVTKTACERFIAEMSVSVPFRLKEDKLLQKAS
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcattgagcggagacgaagaggagtatgattcagagtctgagcagcagcgg
gcggccaaccggccgaagcccaagatggggacgacgtcagccgttaagctgccgtccaac
cgcagctcgtctggtgccagacgcaggaggacacgctgccgaaagtgcgaggcgtgcctc
cgaaccgagtgtggagagtgtcacttctgcaaggacatgaagaagttcggagggccgggg
cgcatgaagcagtcctgcatcatgagacaatgcattgcgcccgtcctgccacacacggcc
gtgtgtgtggtgtgtaaagaggcagggaaggaggacacactggaggaagaggaggacaag
ttcaactttatgctgatggagtgctctatctgcaacgagatcgtccatcccaactgcctc
aaggtgagcgacgccccaggagtggtgaacgatgaactccctaactgctgggaatgtccc
aaatgcaaccatgctgggaaaagtggaaaagtattgaagcaaaaaaggggtccaggcttc
aagtatgcctccaacctccctggctctctgctgagggaacagaagcctgtgaaggaggag
ggagatgcttcttctgcagccaagaggagaccagacagagaggagactcccaggtacaga
cccgaggagtctctccaccgacagccaccactgctctcccccaacagcctgcccagaccc
aggcctgaggacaaactgaggaagaagaggaagctgtttgatgatgatgaggaagaggat
ctcagtgtgaggaagaaggaaaagtcagatgatccttatttatccaaacttctgcaccaa
ataaagacagaagaggaagatgaagatgtatatgaggaggaggatgaagaaggaagggag
cctcacttccgaaatagtgtagacaggaaagggcgtttcggagacgctgaagaagaaggg
gatgacaaggactccaagaatgaaattttgaatccgtgcattaaaacacctgttggagac
agtgaccagtctcactgcagctctccgcaggctggccccagcagtgagggcggaagcgag
acccaggaaaaaggtccgcgtccaaaagctcgccgtaagcgccgtttacctaacagggag
cttagccgggaactgagcaaagcactgaaccaggaaattcaaaagacggaggactgcctg
gccaacgagaatcgccaacccctcaaggtagagccggagacagaaaacgaggaacccaag
aggttgttccgcaacagcaatgaactgggggatcagaggccccacctcaagaccaaagag
atgaatgggaccccgtgggagctgcggcacttctacccaagtcagatcactccgctgggc
ttcaacaggagcaccccaaccaaccggccggtgcccccgcgctccccacccaagtgtgtc
caaatggagcggcacgtcattcgcccccccccaataagcccacctcctgacagactgcct
ctaaaagatggtaaaacgcacgtcatacagcgcgaggtctggatgaagatctttcgctat
ctcacacaccaggagctgtgtgtctgcatgagagtttgcaagacgtggaacagatggtgt
tgtgataagagactttggacaaagatcgacctgaaccgctgcacctccatcactccactc
atgctaagcgggatcatccgccgacagccagtttccctagacctcagctggaccaacata
tccaagaaacaattaagctggcttattaatagattaccaggtctgcgagtgttaaagtta
tcggggtgttcttgggctgctgtatctgcactctgcacctccagctgccctctgctgcgc
accctggatgtccagtgggtggagggacttaaagacgcacagatgagggacctcctctca
ccccccacagacaacagaccaggtcaactggataaccgctgcaagttgcggaatgtggag
aacctgcggctagcggggctggacatcaccgacacgtctttacgtctcatcagtcggcag
atgcctttgctgtccaggctggacctgagctactgcaaccatatcaacgaccagtcagtc
aacctactgacagcagcagggaccacgaccagagactctcttacagaaatcaacctgtct
gtttgtaaccgggtcacagaccattccctaaactttttcaagcgatgtggaagcatctgt
cagatagaccttcgcttctgcaagcaggtgaccaagactgcctgcgaaaggttcatcgca
gagatgtctgtgagcgtaccatttagactgaaagaggacaaactgctgcagaaggcaagc
tag
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