Xanthomonas hydrangeae: LMG31886_27090
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Entry
LMG31886_27090 CDS
T07925
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xhd
Xanthomonas hydrangeae
Pathway
xhd03030
DNA replication
xhd03410
Base excision repair
xhd03420
Nucleotide excision repair
xhd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LMG31886_27090 (ligA)
03410 Base excision repair
LMG31886_27090 (ligA)
03420 Nucleotide excision repair
LMG31886_27090 (ligA)
03430 Mismatch repair
LMG31886_27090 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xhd03032
]
LMG31886_27090 (ligA)
03400 DNA repair and recombination proteins [BR:
xhd03400
]
LMG31886_27090 (ligA)
Enzymes [BR:
xhd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LMG31886_27090 (ligA)
DNA replication proteins [BR:
xhd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LMG31886_27090 (ligA)
DNA repair and recombination proteins [BR:
xhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LMG31886_27090 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LMG31886_27090 (ligA)
MMR (mismatch excision repair)
DNA ligase
LMG31886_27090 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LMG31886_27090 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
CAD7738116
LinkDB
All DBs
Position
LMG31886:complement(3245674..3248175)
Genome browser
AA seq
833 aa
AA seq
DB search
MTVSPDPAQRIDALRHRLEDANYRYHVLDEPQMADVDYDRLMRELEALEAAHPQLASADS
PTQRVGHLAASRFAEVRHALPMLSLGNAFSDEEVAEFVRRISERLEVKHPLFSAEPKLDG
LAISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEEWPQILEVRGEVYMPR
AAFESYNAQMRLHGGKVLANPRNGAAGSLRQLDARITAQRPLSFYAYGVGEVSEGALPQT
HSAILAQLREWGFPVSALVEVVQGSDGLLAYYQRIGAARDGLPFDIDGVVYKLDDLAGQR
EMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKSVHVAGVIVTNATL
HNADQIARLDVRVGDTVIVRRAGDVIPEVAGVVADQRPPGTQPWQMPTQCPVCGSEIVRE
EGEAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGVVQGVADLYLLT
VDQLLQLRLISTPESPHAFLREAREHLATGAYAQLEKTMVSIGVDPAGEREVPQTWQADL
LRAGLPAFDWNRKKIATKWAENLIEAIEKSRDTTLERFLFALGIEHVGESTAKALSAWFG
DLELIRHLPWPLFKRVPDIGGEVARSLGHFLDQPGNQQAIDDLLQRGVRIGDAHPPSPKL
RDALSFASVLEDMDIPKVTPVRAQQLAAAVASFDALRSAGADALLQAGVPAAVVASVQQW
LERPENAALASAAQQAMETVLSRLPEADALQIGPLDGQTVVITGTLAALTRDAAKQRLEA
LGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWEEARLLAFLGEHGQQP
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcagcccggatcccgcgcagcgtatcgacgccctgcgtcatcgtctcgaggac
gccaactaccgttatcacgtgctcgacgaaccgcagatggccgacgtcgactacgaccgc
ctgatgcgcgaactggaggcgttggaggccgcgcacccgcagctggccagtgccgattcg
ccaacccagcgcgtcggccatcttgctgcctcgcgctttgccgaagtgcggcatgccttg
ccgatgttgtcgctgggcaatgccttcagcgatgaagaagtggccgaattcgtgcggcgc
atcagcgagcggctcgaggtcaagcatccgctgttttctgccgagcccaagctcgatggt
ctggcgatcagcctgcgctacgaaaacggcgagttcgtgcagggcgccacgcgtggcgac
ggcgccaccggcgaggatgtcagcgccaatctgcgcaccgtcaaggcgattccgctgcgc
ctgcgtggcgaagagtggccacaaattctggaagtgcgcggcgaggtgtatatgccgcgc
gccgcattcgaaagctacaacgcgcagatgcgcctgcatggcggcaaggtattggccaac
ccgcgcaacggcgccgccggttcgctgcggcagctggatgcgcgcatcaccgcgcaacgc
ccgctgagtttctatgcgtatggcgtgggcgaagtgagcgaaggtgcgttgccgcagacc
cattcggcgatcctggcgcagctgcgcgaatggggttttccggtcagcgccctggtcgag
gtagtgcagggcagcgacgggctgttggcgtattaccaacgcattggtgccgcgcgcgac
gggctgccattcgatatcgatggcgtggtctacaagctcgacgatctggccgggcagcgc
gagatggggtttgtctcgcgcgcgccgcgctgggcgatcgcgcacaaattcccggcgcag
gagcagtccaccacggtggaggcgatcgagatccagatcggccgtaccggtgcggccacg
ccggtggcgcggctgaaatcggtgcacgtggccggggtgatcgtcaccaacgccacgctg
cacaacgccgaccagatcgcgcgtctggatgtgcgcgtgggcgatacggtgatcgtgcgg
cgtgccggcgatgtgattccggaagtggccggcgtggttgccgatcaacggccgcccggc
acccagccatggcagatgcccacgcaatgcccggtatgcggctcggagatcgtgcgcgag
gagggcgaggcggtgtggcgttgctccggcgagctgacctgcccggcgcagcgcaaggaa
gcgttccggcatttcgtctcgcgccgcgcaatggatgtcgatggcctgggcgaaaaattc
atcgaggtgctggtcgacagcggcgtggtgcagggcgtggccgatctgtatctgctcacc
gtcgatcagctgctgcagttgcgtctgatcagcacccccgagagtccgcacgcgtttttg
cgcgaggcgcgcgagcatctggccaccggcgcatatgcgcagctggaaaagacgatggtg
agcatcggtgtggatccggccggcgagcgcgaggtgccgcagacctggcaggccgatctg
ttgcgtgcaggtctgccggcgttcgactggaaccgcaagaagatcgccaccaaatgggcg
gaaaacctgatcgaggcgattgaaaaatcgcgcgacaccacgctcgaacgtttcctgttt
gcgctgggcatcgagcatgtcggcgaaagtacggccaaggcgttgtcggcatggttcggc
gatctggagttgatccgccacctgccgtggccgctgttcaagcgcgtgcccgatatcggt
ggcgaggtggcgcgctcgctcgggcacttcctggatcagcccggcaatcagcaggccatc
gacgatctgctgcagcgtggcgtgcgcatcggcgatgcgcatccgccatcgcccaagctg
cgcgacgcgctgagttttgccagcgtgctggaagacatggatatccccaaggtgacgccg
gtgcgtgcgcagcaactggccgccgcggtggcctcgttcgatgcgttgcgcagcgccggt
gccgatgccttgctgcaggccggcgtgcctgcggcggtcgtcgcctcggtgcagcagtgg
ctggagcggccggaaaacgcggcgttggccagcgccgcgcaacaggcgatggaaacggtg
ctctcgcgcctgcccgaagccgatgcgctgcagatcggcccgctcgacggccagaccgtg
gtcatcaccggcaccttggccgcattgacgcgcgatgccgccaagcagcgcctggaagcg
ttgggcgcgaaagtcgccggcagcgtctccaagaaaaccgcgtttctggtggctggcgaa
gaagccgggtccaagctcgacaaggcgcagtcgctgggcgtggagatctgggaagaagcg
cggctgctggcgtttctcggcgagcacggccagcaaccatga
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