Xiphophorus hellerii (green swordtail): 116708819
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Entry
116708819 CDS
T07363
Name
(RefSeq) otoferlin-like isoform X1
KO
K19949
otoferlin
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116708819
Membrane trafficking [BR:
xhe04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
116708819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
FerB
Ferlin_C
dsrm_Ferlin
FerI
Motif
Other DBs
NCBI-GeneID:
116708819
NCBI-ProteinID:
XP_032402753
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All DBs
Position
19:complement(21056977..21094295)
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AA seq
1785 aa
AA seq
DB search
MKRSKHRGQKEDKGGDEPAILETENMLMGGPDPDTISLASVTAVTTNVSNKRSKPDIKME
PSSGRPMDYQVSVTVIEARQLVGLNMDPMVCVEIGDEKKYTSMKESTNCPYYNEYFVFDF
HIPPDVMFDKILKVSVIHSKNLLRSGTLVGSFKMDVGTVYFQPEHQFYHKWALLSDPDDI
TAGCKGYVKCDIAVVAKGDTIKTPHKANESEDDDIEGNLLLPEGVPAERQWARYYLKIYK
AEGLPRMNTSIMANVKKAFIGENKDLVDPYVQVLFAGQKGKTSVQKSCYEPIWNEQIVFT
EMFPPLCKRMKIQIRDSDKVNDVAMGTHFLDLKKISNDGDKGFLPTLGPAWVNMYGSTRT
YTLMDEYQELNEGLGEGVSFRARLLISLGVEILDPSSPDITSSTEVQVEGVPNISETATG
KVEDFFLFGSFLEATMIDRKIGDKPISFEVTIGYYGNENDGVIQPKTKGKKGDGAEEETE
LIHNSSEEEMDDDGDLTSVSTTPPMKPVITDRNYFHLPYFERKPCIYIKSWWQDQRRRLY
NSNIIDNIANKLEDGLNDVQEIIKTEKTYPERRLRGVLEELSQGCSQFIALANKDHNQSG
RTKLDRERLKLCLSEVEAIGQQAKTMRTQVKKSTVRDKLKLAQNFHTKLRFLADEPQHSV
PDVFIWMISNGKRIAYARVPSKDILYSGIDEERGKDCGKVKTIFLRIPGKKGFGPAGWTV
QSKLEIYLWLGLNRQRKDYLSGLPNGFEENKLSKGPGMPSSPPISLTYMMKQIFQLRVHM
YQARSLFAADSTGLSDPFARVFFSTQSQVTEVLAETLCPTWDQLLVFENVELFGEAYELR
DDPPIIVIELYDQDTVGKADFMGRTFAKPLVKMADEHYGPPRFPPQLEYYQIYRGNGAAG
EMLAAFELLQIGPNGKADLPPIDGPTDMDRGPILPVPLGIRPVLSKYRIEVLFWGLRDLK
RVNLAQVDRPRVDIECAGKGVQSALIPNYKKNPNFSTLVKWFEVDLPENELLHPPLNIRV
VDCRAFGRYTLVGSNAVTSLRKFIYRGSDKQANNWSTTEEIIVVSMETEPAFKKMDTVVK
LDSCSEAVIKVEDDDKDEKGKKKKRKKGDEPEEEELDESMLDWWSKYFASIETLTEALRA
QEAALSDSEEKEDMDIAHGGADDAPAKAPKRGKGKKDKKRAAVDPFEKKKPKLDELKVYP
KELESEFDNFEDWLHTFYLFRGKGGDDDDQNVTDEDRIVGKFKGSLCMYKVSDDLPRDMS
FDSNLGMFQNIPNNDPVNVLVRIYVVRATDLHPADINGKADPYIAIKLGKTEIKDKENYI
SKQLNPLFGKSFDVEATFPMDSTLTVSIYDWDLVGTDDLIGETKVDLENRFYSKHRATCG
ISCSYAIHGYNVWRDPMKPTHVLAKLCKDGKLDGPHYGPGGRVKVENRVFMAPTEIEDEN
GLKKQTDEHLALTVLRHWDGIPKAGCKLVPEHVETRPLLHPDKPGIEQGRIEMWVDLFPK
DKTAPGPALDISPRKPKKFELRVIIWNTDEVVLEDDDIFTGEKSSDIFVRGWLKGQQEDK
QDTDVHYHSITGEGNFNWRFIYPFDYLVAEEKIVISKKESMFAWDETEYKIPPRLNLQVW
DADHFSADDFLGAIELDLNRFPRGAKTAKQCTIEMVTNEAEMPLVSIFKQKRIKGWWPFV
ARNEEDDEFELTGKVEAELHLLTGEEAEKSPAGDGRNEPDPLEKPNRPDVALLWFLIPLK
AAKHLVCDQYRWLTIKIVTALLLLAILGLFLYNMPGYMVKKMLGA
NT seq
5358 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcagtaagcaccgtggacaaaaggaggacaaaggcggagatgagccagccatt
ttggagacggagaacatgttaatgggaggtccagatcccgacaccatctctttggcctcc
gtcacagccgtcaccaccaatgtttcaaataaaagatcaaagccagacatcaagatggag
cccagctctggacgacccatggattaccaggtcagtgtgacggtgattgaagccaggcag
ctggttggcctgaacatggatcccatggtctgtgtggagatcggagatgagaaaaagtac
acctctatgaaggagtcgaccaactgcccttactacaacgaatactttgtgtttgacttc
cacatcccgccagacgtcatgttcgacaaaatcctgaaagtgtccgtgatccactccaaa
aatcttctgcgaagtggaacgctggttggatcttttaaaatggatgttggcacagtctac
ttccagccagagcatcagttttaccacaaatgggccttgttgtctgacccggatgacatc
acagcaggctgcaaaggctacgttaaatgtgacatcgcagttgtggctaaaggagacacc
attaaaactccacacaaggccaatgagtctgaagacgatgacatagaggggaatctgctg
ctacctgagggcgttcctgcagagcgacagtgggctcgttactacctgaagatctacaaa
gcagagggactccccagaatgaacaccagcatcatggccaacgtcaaaaaggcgtttata
ggagaaaataaagacctggttgatccctacgtccaagtgctcttcgcagggcagaagggc
aaaacgtcggtacagaagagctgctatgagcccatctggaacgagcagattgttttcacg
gagatgtttcctcccctctgcaagcgcatgaagatccagatccgggactcggataaagtg
aacgatgtggccatgggaacacacttcttagatctgaagaagatttccaatgatggggac
aaaggcttccttcccacgctggggcccgcctgggtgaacatgtacggctccacccgcacc
tacaccctgatggacgagtaccaggagctaaacgaagggctcggcgaaggcgtgtccttc
agggcccgtctgctcatcagcctgggcgtggagatccttgacccgtcctcgcctgacatc
accagctccaccgaggtccaggtggagggagtgcccaacatctccgagactgctactggg
aaggtcgaggatttcttcctgtttgggtctttcctggaagccacaatgatagacagaaag
atcggcgacaagccaatcagctttgaggtcacaataggttactatggaaacgagaacgat
ggcgtcatccaacccaaaacgaaggggaagaagggcgacggtgctgaagaggaaaccgag
ctgatacacaactccagcgaggaggagatggacgacgacggagacctgacttcagtgtcc
accactccacccatgaaacctgtcatcactgaccgaaactatttccatctgccctatttt
gagaggaagccatgcatttacatcaaaagttggtggcaggaccagaggagacggctgtac
aactccaacatcatcgacaacattgcgaacaaactggaggatggactgaacgacgtgcag
gagatcatcaaaacagagaagacctatcctgaacgaaggctgagaggcgttctcgaggaa
ctcagccaaggatgcagtcaattcattgctctggcaaacaaggaccacaatcagtctggc
agaaccaaactggacagggagagactgaagctttgcttgtcagaagtggaggccattggt
caacaagcaaagactatgaggacccaagtgaagaagagcacagtcagggataagctcaag
ctggctcagaacttccacacaaagcttcgcttcctagccgacgagccccagcacagtgta
cctgatgttttcatctggatgataagcaacggaaagcgcatcgcttacgcccgggttcct
tccaaagacatcctgtactccggtatagatgaggagagggggaaagattgtggcaaggtc
aaaacaattttcctcaggatccctggtaaaaaaggtttcggacctgctggctggacagtt
cagtccaagttagagatttacctgtggctgggcctgaacaggcagcgcaaagactacctg
agcggcctgcccaacgggtttgaggaaaacaagttgtccaaggggcccggcatgccttcc
tcaccacccatcagcctcacctacatgatgaagcaaatcttccagctgagggtccatatg
taccaggctcgcagcctgtttgctgctgacagcacaggtctgtccgatcccttcgcaaga
gttttcttctcaacccaaagccaagtcacagaagtgctggctgagaccctctgccccaca
tgggaccagctgctggtgtttgagaacgtggagttgtttggagaggcctatgaactgagg
gacgatccacccattattgtcattgagctgtacgatcaggacacagtgggtaaagctgac
ttcatgggcaggacgtttgctaagcctttggtcaagatggcggatgagcactatgggccg
ccgcgtttcccaccccagctggagtattatcagatctaccgtgggaacggtgccgctgga
gaaatgctggcagcctttgagcttctccagattggccccaatggaaaagcggaccttcct
cccatagacgggcctacagatatggaccgcggcccaatcctgccggtgcctctggggatt
aggccagtgctcagcaagtacaggattgaggttttgttctggggcttgagggacttgaag
agggtgaatctggcccaggtggatcggcctcgtgtggacattgagtgtgcagggaagggc
gttcagtcggccctcatccccaactacaaaaagaaccccaacttcagcactcttgtcaag
tggttcgaagtggatttgccagagaacgagctgcttcaccctccgctgaacatccgcgtg
gtggactgcagagcgtttggtcgctacactttggtcggctccaacgccgtcaccagcctg
cgcaagttcatctacaggggatcagacaagcaggccaacaactggtccactacggaggaa
attattgtggtaagcatggaaaccgagcctgccttcaagaagatggacaccgtggtcaaa
ctggactcttgctctgaagctgtgatcaaagttgaggacgacgacaaagacgagaaaggg
aaaaagaagaagaggaagaagggggacgaacctgaagaggaggaacttgatgagagcatg
ttggactggtggtccaaatattttgcctcgattgaaactttaactgaggctctcagggct
caggaggcagctctctcagattcagaagaaaaggaagacatggacatcgctcatggtgga
gctgacgacgctccagcgaaagcccccaagagaggaaaaggaaagaaggacaagaaaagg
gcagctgtggatccgtttgaaaagaaaaagccaaagttggatgagctgaaggtgtatcca
aaggaactggaaagtgaatttgacaactttgaggactggctccacaccttttacctgttc
agagggaagggcggtgacgacgacgaccaaaatgtgacggatgaggacaggatcgtcgga
aagttcaaaggctcgctgtgcatgtacaaagtgtcggatgatttgcccagagacatgagc
ttcgactccaacttaggaatgtttcagaacatccctaacaatgaccccgttaacgtcctg
gtccgcatttatgtcgtcagggcgacagatctgcatccagcggacataaatgggaaagct
gacccctacatcgcaatcaagctggggaaaacagagatcaaagacaaggagaactacatt
tccaaacagctgaaccctttgtttggcaagtcctttgacgtggaggccacgttccccatg
gattccactctgacggtgtcaatttatgactgggacctggtgggaaccgatgacctgatt
ggagaaacaaaggtcgacctggagaatcgcttctacagcaaacacagagccacgtgtggg
atttcatgcagctacgccatccatggttacaacgtgtggcgagaccccatgaagcccaca
catgtcctggctaagctgtgtaaggacggcaaactggacggcccacactacggccccgga
ggaagggtgaaggtggagaaccgggtcttcatggcaccgactgagatcgaggatgaaaac
ggcttaaagaagcagacggacgagcaccttgctctgactgtgttgaggcattgggacggg
attcccaaagccggctgcaaactggtcccagagcacgtagagaccagaccgctgctccat
ccggacaaaccgggaatcgaacaaggaagaatcgagatgtgggtggacctgttccccaag
gacaagaccgcgcccggtcccgctcttgacatctcaccacggaaaccgaagaagtttgaa
ctgagggtcatcatctggaacacagatgaggtggttttagaggacgacgacatcttcacg
ggcgagaaatctagtgacatctttgtgcgaggatggctgaagggacagcaggaggacaag
caggacactgatgtccactaccactccatcaccggggaggggaacttcaactggcgcttc
atctaccctttcgactacctggtggccgaggagaagatagtcatctccaagaaggagtcc
atgttcgcctgggatgagaccgagtacaagatcccgcctcgacttaacctccaagtgtgg
gacgccgatcacttctctgccgatgattttctgggtgcgatcgagctggacctgaaccgc
ttcccgcgcggcgcaaagacggccaagcagtgcaccatagagatggtgacaaacgaagcg
gagatgccgctggtctccatcttcaagcagaagaggatcaaaggctggtggccgtttgtc
gccaggaacgaagaagacgacgagtttgaactcacgggtaaggtggaagctgagctgcac
cttctcacgggggaggaagctgagaaaagcccagctggagacgggcgcaacgagccagat
cctctggagaaacccaaccgcccagatgttgccctcctctggttcctcatcccgctcaaa
gcagcgaagcacctggtgtgcgaccagtacaggtggctgaccatcaagatcgtcacggcg
ctcctgctgctggccatcctgggccttttcctctacaacatgcccggatacatggtgaag
aaaatgctgggcgcttga
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integrated database retrieval system
