Xiphophorus hellerii (green swordtail): 116709065 Help Entry 116709065         CDS       T07363                                  Name (RefSeq) thrombospondin-1-like   KO K16857   thrombospondin 1 Organism xhe  Xiphophorus hellerii (green swordtail) Pathway xhe04115   p53 signaling pathway xhe04145   Phagosome xhe04148   Efferocytosis xhe04350   TGF-beta signaling pathway xhe04510   Focal adhesion xhe04512   ECM-receptor interaction xhe04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:xhe00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     116709065   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     116709065  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     116709065    04148 Efferocytosis     116709065   09143 Cell growth and death    04115 p53 signaling pathway     116709065   09144 Cellular community - eukaryotes    04510 Focal adhesion     116709065   09142 Cell motility    04820 Cytoskeleton in muscle cells     116709065  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:xhe04131]     116709065   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:xhe00536]     116709065 Membrane trafficking [BR:xhe04131]  Endocytosis   Phagocytosis    Opsonins     116709065 Glycosaminoglycan binding proteins [BR:xhe00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    116709065 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_ADAMTS EGF_3 TSP1_CFP_C EGF_CA cEGF EGF TSP1_CCN Motif Other DBs NCBI-GeneID:  116709065 NCBI-ProteinID:  XP_032403233 LinkDB All DBs Position 19:11505491..11513882 Genome browser AA seq 1172 aa AA seqDB search MMLCGILFLLMLWSCDGARLAETRDDNSVYDLFELARVSKRHNGVSLVKGADPYSPAYKV LNADLIPPVPDASFRDLLDSIQAERGFLLLLNLKQSKKTRGSLLTVEKTDGSGPIFEIIS NGKANTLDLVYSTERQLQVVSIEDAGLANGHWRNLTLFIQEDRAQLFVGCEEINVSELDV PIQTLLSRELADRARLRIGKGAVKDKFMGVLQNVHFVFGTSLDAILTNKGCKSGAALTQM MTLDNPVNGSSPAIRTDYTGHKSKDLQTVCGFSCEDITSMFKELRGLNVIVKQLSNELQK VSTDSELLKNQIIIHNGVCIHNGIVHKDKDEWTVDGCTECTCQNSATICRKISCPLIPCA NATVPDGECCPRCGTPSDFPEGGWSAWSDWTHCSVTCGRGIQQRGRSCDRINSKCEGTSV QTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVMTQIRLCNSPTPQMGGRDCQGEG RHTKICQMSPCPINGEWGPWSPWDTCSATCGGGVQTRNRLCNDPMPKYGGKDCIGDATMV QICNKQDCPIDGCLSNPCFPGTKCTSFRDGSFECGKCPLGYIGDGITCTDIDECKEVPDA CHTHNGIHLCENTEPGYNCLPCPSRFSGPQPFGRGVEQATAKKQVCTPRNPCKDGSHNCH KNANCIYLGVYSESMFRCECKPGYAGNGRICGEDSDLDGWPNTDLPCVENATYHCKKDNC PNLPNSGQEDHDKDGLGDECDHDDDNDGIPDDRDNCPRVYNPAQYDADRDDVGDRCDNCV FEANTDQTDTDNNGEGDACAVDIDGDGILNENDNCPYVYNVDQRDTDRDGVGDHCDNCPL EHNPDQVDSDSDRIGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD DNDGIPDDKDNCRLAFNPDQLDSDGDGRGDICKDDFDQDNVLDIHDVCPENFAISETDFR RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYDEFSAVDFSGTFFINTDR DDDYAGFVFGYQSSSRFYTVMWKQITQTYWSHTPTRAQGYSGLSIKVVNSTTGPGEHLRN ALWHTGDTAGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKTGLIRVVMYEGKRIMADSGNI YDKTYAGGRLGLYVFSQEMVYFSDLKYECRDT NT seq 3519 nt NT seq  +upstreamnt  +downstreamnt atgatgctgtgtggcatcctttttctgctgatgctttggagttgcgatggtgccagattg gcagagactcgcgatgataacagtgtgtatgacctatttgagctggcgagggtgagcaaa agacacaacggagtgagtctagtcaaaggcgcagacccttacagtcccgcatacaaggtc ctgaacgcagacctgatccccccagtccccgacgcctccttcagggacctcctcgattcc atccaggccgagcggggattcctcctactacttaacctgaagcagtccaagaaaactaga ggcagcctgctgacagtcgagaagaccgacggatctggccctatcttcgagataatttct aacgggaaggcgaacactcttgatctggtctactccaccgagaggcagctgcaggtggtg tccatcgaagatgccggcttggccaatgggcactggaggaacctcacgctgttcatccag gaggacagggcacagctctttgtgggctgtgaagagatcaatgtgtcagagctggatgtg ccaatccaaactttactgtccagggagttggcagatagagccagactcaggattggaaag ggggcagtgaaggacaagtttatgggagtcctccagaatgtccattttgtctttggaacc tctctagatgccatactgaccaataagggatgtaaaagtggagctgctttaacccaaatg atgaccctggacaacccagtcaatggttccagtcctgccattagaaccgattatactggc cacaaatccaaagatctgcagactgtctgcggtttctcatgtgaggatattaccagtatg tttaaggagctcaggggactcaacgtgattgttaagcagctgtcaaatgaactccaaaaa gtgtctactgatagtgagttactgaaaaatcagatcatcatccacaatggagtctgcatc cataacggcattgtgcacaaggacaaagatgaatggacagtggatggctgcacagagtgc acctgtcagaactctgcaaccatatgtcgcaaaatatcctgtcctctcatcccctgcgcc aatgccactgtgcccgatggcgaatgctgcccacgctgtggaacaccaagtgactttccc gagggtggttggtctgcctggtctgactggacccattgttctgtgacttgtggtcgtgga atccagcagcgtggacgctcctgtgatcgcatcaacagcaagtgtgagggcacctctgtc cagacccgtgactgctacccgcaggaatgcgacaagcgcttcaagcaggacggaggctgg agccactggtcaccctggtcttcatgctctgtgacctgtggcgaaggggtcatgacacag atccgtctctgcaactcccccacaccgcagatgggtggtagagactgccaaggagaagga cgtcacaccaaaatctgccaaatgtcgccttgtcccattaatggagaatggggaccttgg tcaccatgggatacctgctcggcaacctgtggtggaggagtccaaacaagaaaccgtctc tgcaatgatccgatgcctaaatacggaggaaaagattgtattggtgatgctaccatggtt caaatctgcaacaaacaggactgccctattgatggttgcctttccaacccatgcttccct ggtacaaagtgcaccagtttccgtgatggctcatttgagtgtggcaagtgcccacttggc tacattggtgatgggattacctgcacagacattgatgaatgcaaagaggtcccagatgct tgccatactcacaatggaattcatctttgtgagaacactgagccaggttacaactgcctc ccctgtccttcccgtttctctggtccccaacctttcggaagaggtgtggaacaggcaact gctaaaaaacaggtgtgcactccccgcaacccttgcaaggatggtagccacaactgccat aaaaatgcaaactgcatatatttgggcgtctactccgagtcaatgttccgctgtgaatgc aagccaggatatgctgggaatggccggatttgtggagaggacagtgacctggatggatgg cctaacacggatctgccgtgtgtggagaacgccacttatcactgcaaaaaggataactgc cccaaccttcccaactctggccaggaagaccatgacaaagatggccttggggatgaatgt gaccatgatgatgacaatgatggaattcccgatgatagggataactgtccaagagtgtac aaccctgctcagtatgatgcagacagggatgatgttggtgaccgctgtgacaactgtgtg tttgaggctaatactgaccaaacagacacagacaacaatggagagggagatgcctgtgct gtcgacattgatggtgatggtattctgaatgagaatgacaactgcccgtatgtgtacaat gttgaccagagagacacagacagggatggtgttggagatcactgtgataactgtcccctc gagcataacccagaccaggttgactctgactcagatcgtattggagacaagtgcgataac aaccaggacattgatgaggatggtcaccagaacaacttggataactgcccatacattccc aatgccaaccaggccgaccatgacaaagatggcaaaggtgatgcttgcgaccatgatgat gacaatgacggcattcctgatgataaagacaactgccgattggcttttaaccctgatcaa ctggactctgatggtgatggccgtggagatatttgcaaggatgattttgaccaagacaat gtcctggacatccatgatgtttgccctgagaactttgccatcagtgaaacagacttccgc agattccaaatggtacccttggatcccaaaggcacctctcagattgaccccaactgggtg gtgaggcatcaaggcaaggagctggtgcagactgtcaactgtgatcccggcattgctgtt ggttacgatgagttcagtgccgtggatttcagtggaacgttcttcatcaacacggacaga gatgatgactatgccgggtttgtgtttggctaccagtccagctcccgcttctacacagtg atgtggaaacagatcacacagacttactggtcccacacacccactagagctcaaggctac tctggcttgtcaatcaaagttgtaaattctaccacagggcctggcgaacatctcagaaat gctctgtggcacaccggagacaccgcaggacaggtccgtactctgtggcacgaccccaag aacattggctggaaggactttactgcctatagatggcacctaacccacagacccaagact ggacttattagagtggtcatgtatgaaggcaagagaatcatggcggattctggaaacatt tatgataagacatatgctggtgggcgactaggcttgtatgtcttctctcaggagatggtt tacttctcagacctcaaatatgaatgtagagatacataa

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