Xiphophorus hellerii (green swordtail): 116709065 Help Entry 116709065         CDS       T07363                                  Name (RefSeq) thrombospondin-1-like   KO K16857   thrombospondin 1 Organism xhe  Xiphophorus hellerii (green swordtail) Pathway xhe04115   p53 signaling pathway xhe04145   Phagosome xhe04148   Efferocytosis xhe04350   TGF-beta signaling pathway xhe04510   Focal adhesion xhe04512   ECM-receptor interaction xhe04518   Integrin signaling xhe04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:xhe00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     116709065   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     116709065    04518 Integrin signaling     116709065  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     116709065    04148 Efferocytosis     116709065   09143 Cell growth and death    04115 p53 signaling pathway     116709065   09144 Cellular community - eukaryotes    04510 Focal adhesion     116709065   09142 Cell motility    04820 Cytoskeleton in muscle cells     116709065  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:xhe04131]     116709065   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:xhe00536]     116709065 Membrane trafficking [BR:xhe04131]  Endocytosis   Phagocytosis    Opsonins     116709065 Glycosaminoglycan binding proteins [BR:xhe00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    116709065 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_ADAMTS VWC2L_2nd EGF_3 TSP1_CFP_C EGF_CA cEGF EGF TSP1_CCN Motif Other DBs NCBI-GeneID:  116709065 NCBI-ProteinID:  XP_032403233 LinkDB All DBs Position 19:11505491..11513882 Genome browser AA seq 1172 aa AA seqDB search MMLCGILFLLMLWSCDGARLAETRDDNSVYDLFELARVSKRHNGVSLVKGADPYSPAYKV LNADLIPPVPDASFRDLLDSIQAERGFLLLLNLKQSKKTRGSLLTVEKTDGSGPIFEIIS NGKANTLDLVYSTERQLQVVSIEDAGLANGHWRNLTLFIQEDRAQLFVGCEEINVSELDV PIQTLLSRELADRARLRIGKGAVKDKFMGVLQNVHFVFGTSLDAILTNKGCKSGAALTQM MTLDNPVNGSSPAIRTDYTGHKSKDLQTVCGFSCEDITSMFKELRGLNVIVKQLSNELQK VSTDSELLKNQIIIHNGVCIHNGIVHKDKDEWTVDGCTECTCQNSATICRKISCPLIPCA NATVPDGECCPRCGTPSDFPEGGWSAWSDWTHCSVTCGRGIQQRGRSCDRINSKCEGTSV QTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVMTQIRLCNSPTPQMGGRDCQGEG RHTKICQMSPCPINGEWGPWSPWDTCSATCGGGVQTRNRLCNDPMPKYGGKDCIGDATMV QICNKQDCPIDGCLSNPCFPGTKCTSFRDGSFECGKCPLGYIGDGITCTDIDECKEVPDA CHTHNGIHLCENTEPGYNCLPCPSRFSGPQPFGRGVEQATAKKQVCTPRNPCKDGSHNCH KNANCIYLGVYSESMFRCECKPGYAGNGRICGEDSDLDGWPNTDLPCVENATYHCKKDNC PNLPNSGQEDHDKDGLGDECDHDDDNDGIPDDRDNCPRVYNPAQYDADRDDVGDRCDNCV FEANTDQTDTDNNGEGDACAVDIDGDGILNENDNCPYVYNVDQRDTDRDGVGDHCDNCPL EHNPDQVDSDSDRIGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD DNDGIPDDKDNCRLAFNPDQLDSDGDGRGDICKDDFDQDNVLDIHDVCPENFAISETDFR RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYDEFSAVDFSGTFFINTDR DDDYAGFVFGYQSSSRFYTVMWKQITQTYWSHTPTRAQGYSGLSIKVVNSTTGPGEHLRN ALWHTGDTAGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKTGLIRVVMYEGKRIMADSGNI YDKTYAGGRLGLYVFSQEMVYFSDLKYECRDT NT seq 3519 nt NT seq  +upstreamnt  +downstreamnt atgatgctgtgtggcatcctttttctgctgatgctttggagttgcgatggtgccagattg gcagagactcgcgatgataacagtgtgtatgacctatttgagctggcgagggtgagcaaa agacacaacggagtgagtctagtcaaaggcgcagacccttacagtcccgcatacaaggtc ctgaacgcagacctgatccccccagtccccgacgcctccttcagggacctcctcgattcc atccaggccgagcggggattcctcctactacttaacctgaagcagtccaagaaaactaga ggcagcctgctgacagtcgagaagaccgacggatctggccctatcttcgagataatttct aacgggaaggcgaacactcttgatctggtctactccaccgagaggcagctgcaggtggtg tccatcgaagatgccggcttggccaatgggcactggaggaacctcacgctgttcatccag gaggacagggcacagctctttgtgggctgtgaagagatcaatgtgtcagagctggatgtg ccaatccaaactttactgtccagggagttggcagatagagccagactcaggattggaaag ggggcagtgaaggacaagtttatgggagtcctccagaatgtccattttgtctttggaacc tctctagatgccatactgaccaataagggatgtaaaagtggagctgctttaacccaaatg atgaccctggacaacccagtcaatggttccagtcctgccattagaaccgattatactggc cacaaatccaaagatctgcagactgtctgcggtttctcatgtgaggatattaccagtatg tttaaggagctcaggggactcaacgtgattgttaagcagctgtcaaatgaactccaaaaa gtgtctactgatagtgagttactgaaaaatcagatcatcatccacaatggagtctgcatc cataacggcattgtgcacaaggacaaagatgaatggacagtggatggctgcacagagtgc acctgtcagaactctgcaaccatatgtcgcaaaatatcctgtcctctcatcccctgcgcc aatgccactgtgcccgatggcgaatgctgcccacgctgtggaacaccaagtgactttccc gagggtggttggtctgcctggtctgactggacccattgttctgtgacttgtggtcgtgga atccagcagcgtggacgctcctgtgatcgcatcaacagcaagtgtgagggcacctctgtc cagacccgtgactgctacccgcaggaatgcgacaagcgcttcaagcaggacggaggctgg agccactggtcaccctggtcttcatgctctgtgacctgtggcgaaggggtcatgacacag atccgtctctgcaactcccccacaccgcagatgggtggtagagactgccaaggagaagga cgtcacaccaaaatctgccaaatgtcgccttgtcccattaatggagaatggggaccttgg tcaccatgggatacctgctcggcaacctgtggtggaggagtccaaacaagaaaccgtctc tgcaatgatccgatgcctaaatacggaggaaaagattgtattggtgatgctaccatggtt caaatctgcaacaaacaggactgccctattgatggttgcctttccaacccatgcttccct ggtacaaagtgcaccagtttccgtgatggctcatttgagtgtggcaagtgcccacttggc tacattggtgatgggattacctgcacagacattgatgaatgcaaagaggtcccagatgct tgccatactcacaatggaattcatctttgtgagaacactgagccaggttacaactgcctc ccctgtccttcccgtttctctggtccccaacctttcggaagaggtgtggaacaggcaact gctaaaaaacaggtgtgcactccccgcaacccttgcaaggatggtagccacaactgccat aaaaatgcaaactgcatatatttgggcgtctactccgagtcaatgttccgctgtgaatgc aagccaggatatgctgggaatggccggatttgtggagaggacagtgacctggatggatgg cctaacacggatctgccgtgtgtggagaacgccacttatcactgcaaaaaggataactgc cccaaccttcccaactctggccaggaagaccatgacaaagatggccttggggatgaatgt gaccatgatgatgacaatgatggaattcccgatgatagggataactgtccaagagtgtac aaccctgctcagtatgatgcagacagggatgatgttggtgaccgctgtgacaactgtgtg tttgaggctaatactgaccaaacagacacagacaacaatggagagggagatgcctgtgct gtcgacattgatggtgatggtattctgaatgagaatgacaactgcccgtatgtgtacaat gttgaccagagagacacagacagggatggtgttggagatcactgtgataactgtcccctc gagcataacccagaccaggttgactctgactcagatcgtattggagacaagtgcgataac aaccaggacattgatgaggatggtcaccagaacaacttggataactgcccatacattccc aatgccaaccaggccgaccatgacaaagatggcaaaggtgatgcttgcgaccatgatgat gacaatgacggcattcctgatgataaagacaactgccgattggcttttaaccctgatcaa ctggactctgatggtgatggccgtggagatatttgcaaggatgattttgaccaagacaat gtcctggacatccatgatgtttgccctgagaactttgccatcagtgaaacagacttccgc agattccaaatggtacccttggatcccaaaggcacctctcagattgaccccaactgggtg gtgaggcatcaaggcaaggagctggtgcagactgtcaactgtgatcccggcattgctgtt ggttacgatgagttcagtgccgtggatttcagtggaacgttcttcatcaacacggacaga gatgatgactatgccgggtttgtgtttggctaccagtccagctcccgcttctacacagtg atgtggaaacagatcacacagacttactggtcccacacacccactagagctcaaggctac tctggcttgtcaatcaaagttgtaaattctaccacagggcctggcgaacatctcagaaat gctctgtggcacaccggagacaccgcaggacaggtccgtactctgtggcacgaccccaag aacattggctggaaggactttactgcctatagatggcacctaacccacagacccaagact ggacttattagagtggtcatgtatgaaggcaagagaatcatggcggattctggaaacatt tatgataagacatatgctggtgggcgactaggcttgtatgtcttctctcaggagatggtt tacttctcagacctcaaatatgaatgtagagatacataa

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