Xiphophorus hellerii (green swordtail): 116710325
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Entry
116710325 CDS
T07363
Symbol
rnf123
Name
(RefSeq) E3 ubiquitin-protein ligase RNF123
KO
K12169
Kip1 ubiquitination-promoting complex protein 1 [EC:
2.3.2.27
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116710325 (rnf123)
Enzymes [BR:
xhe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116710325 (rnf123)
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116710325 (rnf123)
Multi subunit type E3
KPC complex
116710325 (rnf123)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_RNF123
SPRY
zf-C3HC4_3
zf-RING_2
zf-C3HC4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
116710325
NCBI-ProteinID:
XP_032405206
LinkDB
All DBs
Position
20:complement(3688415..3746862)
Genome browser
AA seq
1327 aa
AA seq
DB search
MSTKGGVTALPRRNYRLASDMDKPRSTGIVNEKLLSDYLHHVFPSTKPGPTVASLRKPLG
FQDLSSHLEKLLSEGETPEELKDPSAEGRLGPQPVVLDHTSGFEGLLFVDDDLLGVIGHS
NFSSIRATTCVFKGKWAYEVLISSQGLMQIGWCTLSCRFNQEEGVGDTPDSYAYDGNRVR
KWNVTTTNYGKSWAAGDIVSCLIDLDEGTITFCLNGQSLGTAFSSIKTGPGVAYFPAISL
SFKESVAFNFGSRPLRYPADGYLPLQDPPTADLLKAHRLLGYIKNVLSTSIDAQEEKLLE
KDSAVWRLQGDPTVLITLAHIFNVFAPLMCKVYLVEDVLMNFLLGILEGGGSVDEHPLIQ
QLLDLFWLLMEDHEVNECLKQLMMSLLRAYRFSPIIPDLGFQIHYLRLTTAILRHEKSRK
YLLNNVLFDVLRSVVFFYIKTPLRVKEAGLEELIPTTWWPTHFDKEGKDEREPKDESSDE
RLRRRAYERGCQRLKKRIEVVEDLQVQILRLLLNNKDKNTGEASRYIFLNKFRKFLQENA
SNRGHPTALCPPEYMVCFLHRLITAVRSSWDEGSRKSPSSLSSEDAYVPPQLFYNGKVDY
FDLQRLGGLLSHLKKTLKDDLATKANIVIDPAEIQAASMDDLDEDEESGAAQRPFGAAAM
GGALARPSWLSSPTLGRANRFLSTAAVSLMTPRRPLSQPEKVKVRTLAVEQRTEEDIEGS
HGNDGLLLGRPQEEPDQPITDKSLLEIIDGIVMMYNLSVHQQLGKMVVVADEVHEYAVAL
KDTEEKIDRCPTRRADILDELQKSQKVFAEKLNHLSRRLAWINATIYSKEKMLDVYWLLC
VCIRTIEHADNTASLFAFTPEFYLNVAMNAYSALKNYFSPANSMDELPGYEETLTQLAAI
LAKHFADPRIVGTDIKDSLMQALASYVCYPQSLRAVERIPEEQRVAMMRNLLAPYEQRPW
AQTNWILVRLWRGCGFGYRYTRLPHLLKTKPEDANLPSLQKPCPSLLLQRHMAELLSMDK
DMAASFLNSVLNQLNWAFSEFIGMIQEIQQAAERPERNFVDTRQLKVCATCFDLSVSLLR
VLEMTVTLVPEIFLDWTRPSAELLLRRLAQLLNQVLNRVTAEKNLFDRVVNLRLPGLESV
DHYPILVAVTGILVRILVDGDKQGTSRASSVLLSDPCFQLHSIQHLLGEPAESTGPSAGP
TVAGRPVAGPPGPSAAPPAPPAAGSASERKHFSLHAYTDYISLEEKQKVEEMLEFLTEES
KQAAASTAPTSEEDLCPICYAHSISAVFRPCSHKSCKACINQHLMNNKDCFFCKATITGV
EDYSKPS
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaaagggaggagtcacagctttgccgcgcaggaactacagactggcctcagac
atggacaaacccagatccacaggtattgtgaacgagaagctgctgagcgactacctgcac
cacgtgtttccctccaccaagccggggccgaccgtcgcctcgctcaggaagcctcttggt
ttccaggacctgagctcacacctggagaagcttctgtctgaaggagaaacacctgaagag
ctcaaagatccgtctgcagagggccgtctgggtcctcagcctgtggttctggaccacacc
agcggctttgagggcctcttgttcgtggacgacgacttgctgggggtgattggccacagc
aacttcagttccatcagagccaccacctgcgtttttaaagggaaatgggcctacgaggtt
ctgatctcctctcagggtctgatgcagatcggctggtgcactttgagctgtcgcttcaac
caggaggaaggggtcggggacacgccggactcgtacgcctatgatggaaaccgggtcaga
aagtggaacgtgacaaccaccaactacggaaagtcgtgggcggctggagacatcgtcagc
tgtctgatcgacctggatgaaggaaccatcaccttctgcctgaatggccagtctctgggg
acggccttcagcagcatcaagacgggtcccggcgtggcgtacttcccggccatcagcctc
tccttcaaagagtcggtggcgtttaacttcggcagccggccgctcaggtacccggctgat
ggctacctgccgctgcaggacccccccaccgcagacctgctgaaggcccacaggctgctg
ggatacatcaagaacgtcctgtccacctccatcgacgctcaggaagagaagctgctggag
aaagactccgccgtctggaggctccagggagatccgaccgttctcatcactctggctcac
atcttcaacgtcttcgctccgctcatgtgtaaggtctacctggtggaggatgtgctgatg
aacttcctgctgggaatcctggaaggaggcggttctgtggatgaacatccgctcatccag
cagctgctggacctcttctggctgctgatggaggaccacgaggtgaacgagtgcctgaag
cagctcatgatgtccctgctgagggcgtaccgcttctctcccatcatcccggacctgggc
ttccagatccactatctgcgtctgaccacggccatcctgcgccacgagaagtccaggaag
tacttgctcaacaacgtcctgttcgatgttctgcgttcagtggtcttcttctacatcaag
actcctctgagagtcaaggaggcggggctggaggagctgatcccgaccacctggtggccc
acacacttcgacaaagagggaaaagatgagcgagaacccaaagacgagagttcagacgag
cgtctgaggcgccgagcgtacgagagaggctgccagcggctgaagaagaggatcgaagtg
gtggaggacctgcaggtccagatcctcaggttgctgctcaacaacaaggacaaaaatacg
ggagaagcttctcgttacattttcctcaacaagttcaggaagttcctgcaggagaacgcc
agcaaccgagggcatcccacagctctgtgtcctccagaatacatggtgtgtttcctgcac
cgtctcatcaccgccgtgcggagcagctgggacgaaggcagcaggaagagtcccagcagc
ctcagcagcgaagacgcctatgttcctcctcagctcttctacaacgggaaggtggattac
tttgacctgcagagactgggaggactcctgtcccacctgaagaagactcttaaagacgac
ctcgccactaaggccaacatcgtcatcgaccccgcggagattcaggccgcgtcgatggac
gacctggacgaagacgaggagagcggagccgctcagaggcctttcggagcagcggcgatg
ggcggtgcgctggcccgacccagctggttgagttctcccactctgggccgggccaaccgg
ttcctgagcactgcggccgtcagcctgatgacgccgcggcggccgctgtcccagccggag
aaggtgaaggttcggacgctggcggtggagcagcgcaccgaggaagacatcgagggtagc
cacggaaacgacggcctgttgctggggcgaccgcaggaggagcccgaccagccaatcaca
gacaagtctctgctggagatcatcgacggcatcgtgatgatgtacaacctgagcgtccat
cagcagctggggaagatggtggtggtggcagacgaggtccatgagtacgctgtggctctg
aaggacaccgaggagaagatcgatcgctgccccaccagacgcgcagacatcctggacgag
ctgcagaaaagccagaaggtttttgcagaaaagctgaaccatctgagccgccggctggcc
tggatcaacgccaccatctactccaaggagaagatgctggacgtctactggctgctgtgc
gtctgcatccggaccatcgagcacgccgacaacacggcgtcgctgttcgccttcacgccg
gagttctacctcaacgtggccatgaacgcctacagcgccctgaagaactacttcagcccc
gccaacagcatggacgagctgccaggttacgaggaaacgctgactcagctcgccgccatc
ctcgccaagcactttgcggacccacgcatcgttgggacagatatcaaagattccctgatg
caggcgctggccagctacgtctgttacccacaatccctcagggcggtggagaggatccca
gaggagcagcgagtggccatgatgaggaaccttctggctccgtatgagcagagaccctgg
gctcagaccaactggatcctggtcagactctggaggggctgcgggttcggctacaggtat
acccgcctgcctcacctgctgaagaccaaacccgaggacgccaacctgcccagcctgcag
aagccgtgcccgtcgttgctgctgcagagacacatggcggagctgctgagcatggacaaa
gacatggccgcctccttcctcaacagcgtcctgaaccagctcaactgggccttctccgag
ttcatcggcatgatccaggagatccagcaggcagcggagcgcccagagaggaactttgtg
gacacccgtcagctgaaggtgtgcgcgacctgcttcgacctttccgtcagcctgctcagg
gttctggagatgaccgtgactctggttccggagatcttcctggattggacccggccgtcg
gcggagctgctgctgaggcggctcgcccagctgctgaaccaggttctgaaccgagtcacg
gccgagaagaacctgttcgatcgggtcgttaaccttcggctgccaggtctggagagcgtg
gaccactacccgatcctggtggccgtgacgggaatcctggtccggatcctggtggacgga
gacaaacagggaacgtccagagcttcctccgtcctcctctccgacccctgcttccagctc
cactccatccagcacctcctgggggaaccggcagagtccacagggccgtccgccgggccc
acagtcgccggccggcccgtagccgggcctccgggtccctctgcggcgccgccggctcct
ccggcggctgggagtgcctcagagaggaaacacttctccctgcatgcatacaccgactac
atcagcctggaggagaagcagaaggtggaggagatgctggagtttctcaccgaggagtcc
aagcaggctgccgcctccacagcgccgaccagcgaggaagatctctgccccatctgctac
gcccactccatctccgccgtcttcaggccctgctcacacaagtcctgcaaagcctgcatc
aatcagcatctgatgaacaacaaggattgcttcttctgcaaggccaccatcaccggggtg
gaggactacagcaagccctcctaa
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