Xiphophorus hellerii (green swordtail): 116710346
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Entry
116710346 CDS
T07363
Name
(RefSeq) msx2-interacting protein-like isoform X1
KO
K25100
Msx2-interacting protein
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
116710346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xhe03036
]
116710346
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
116710346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
SPOC
RRM_PARP14_3
RRM_3
RRM_7
Motif
Other DBs
NCBI-GeneID:
116710346
NCBI-ProteinID:
XP_032405239
LinkDB
All DBs
Position
20:complement(17330712..17349998)
Genome browser
AA seq
3138 aa
AA seq
DB search
MVRETRHLWVGNLPEHVREEKIMEHFKRYGRVESVKVLRKRGSEGGVAAFVDFVDIKSAQ
KAHNAVNKMGDRDLRTDYNEPGSVPSAVRGLEDSSPSGSRDVAGFPRGTVGPVFGPPVSL
HTREGRFERRIDGSSESRERAYDHSPYGHHERSGTFDRQRHYNADYYRDRPVFAPAGPGS
SAIGGSFEAADPHFDSRIRDPFTLTNSTRRDLYRDDRGRRVDRSYHHRRSRSSHSSQSRH
PSPQRTAGQTSKTPHSPKRTPLSPGRGPRSRSQSRSSSSDSVSSTSSTGSGSDSNSSSSD
GSRARSVQSSAAPQTCLVMDSEEPRRSFGIKVQNLPVRSTDTSLKDGLFHEFKKYGKVNS
VQIHGASEDRYGLVFFRQQEDQEKALSVSKGKLFFGMLIEVTAWNGPETENENDYRPLDG
RLDEFHPKATRTLFIGNLEKTTSYQQLLDIFQRFGEIVDIDIKKVNGIPQYAFVQYSDIG
SVCKAIKKMDAEYLGNNRLKLGFGKSIPTTCVWLDGLTPNITEQYLTRHFMRYGHVVKVV
FDRIKEMALILYNNTDFAQAAVRETKGWKIGGNKIKVDFASQESQNAFYRSMQASGQDIR
DFYEVPPERREDRRPPYHEFTAERAYYENIRTTGLYPEEARREYAARSRERFPELEHYQG
EHFDPRYHEDPRDYRDYRDPFEQDIRKYTYIQRERERERERFEADRSRWSPSQRRAVTPT
ISPSPSERAARDSERRVYSQSSERSGSVSSMSPPHLDKSEKTLLDHAAKSEKSAQPDRMA
GAEKIKRPKRKDKTDKEKTEKNKSRKGKGQSPASQIPETEPDAAFDGGRGRGSDQDVHEK
PKSKVDGDALSGNQLTASQDSVKTETTKGDIAELDGKPKLKKQPKSDIGNDGKDSAVDSD
RLAARKRRFGDLGGKTVRQKRSRHEEEDGSQSSDLGSSTTFVKEPDVDKHKDPQRRDARL
KTEKSVTQKDGLEDLRGQREKSEGSADLPESKRQQGSTSSRRVSLEGNSDQSILREQEQT
AAFKPSQNAETNKNAKTKEDHVDIDLSQSYRKQMEQNRRLHMQQQQQRESDKLKKAESLL
KNETEDLEHRSLVHEVGKPPEDVTDNFPSHKLSDQFEAEPGIKRERFYRRQKSEDPDWNS
TPSPGHQVFSQHADEDFMDASLKELSRNNQKIHPELELLVKRTHNTQVNKTNTPINIGEE
DQQKRWESRVKQDLLPNLNFSRGLGKNLHNRKPSEYGLWHDLEPGEVRSDSEEDRENKPL
SPAPSTSMPFSERPRPDRFSDPKLAHLERNKFYSFALDQTITPDTKALLERAKSLSSSRE
DNWSFLDYDSHFVNFRSQKDTEKVESAPRPTPSWYMKKKKIRSGSEDKLDDRKEEPKPEE
QERRELFASRFLHSAVFELDSRRLQHLERKYEELEHMLNQQASQQGAEGELETGPVVLFH
SRFLELTQLQQQKNKSQQLQEDKGNTVCTSENKEEKPSEQEQQDLRSNDMPESSVAAEIK
PISPVEQVAPEPKLTPNLVIQSANKDTPFSHQKCVLPTPPADVCPPMSFTKEETKEEVKE
SEDVVPMHCSPTETLKSEPAPETVPETNISEENLEFLEEDAKPLIDEQTNDPGSHEELVS
RSEPEPSPEMPQPEVPTASSPVQLSVAEEADLIKEDPLSTCQKTVESEGEKKLEQVSKEE
ISVDSDAIEEPVSFQKENKTKEIKTKKGRQSPAQVPLTSVSEKQATRKSERIDKDKLKRG
SSPRAETKSSAKSPTPGSDHDHSEQSIPISRARTRRNVKSVYATPVEDDAPTRGKETESP
RSARKRGTEKEAVQHSTESEPPTPAPAKQRGRPPKNRKPIEEISAAKTEKIKMDKDADSN
ESENGERVSRVAKGKMSPYLTKGSSNPIPSVPGSKKGDKTETADENQVIHFTEAEDLSSQ
HSSSSGKDSSVKSDVKKGSELDKDVHEKLCEEKSNGKETDSLLGEEKPAPEKEKIIKGKV
KAPKPHVFRDLQVILDVKEVKDHVSRCTTANKECPNEEKEKKDVDASKSSSLQERELEQA
VENIAKLTEPALPTELPTPPVPPAEVKSDPEEEKPCNPASETELMAAIDSITGEDVSVPL
TPAAPVSTEVCSEPEVQEFVPPVKVEEPETALQEEAVFSNTPKKSYKGRPKTPKRPKAPK
HARKDVKEELSEELTVPLAESTASDVKVVAEKPPSAAAAAVITPTTWKSEAELPAVKAAE
SELPSPVEEQTQAVKPTHPQAKSPIYPQQLPAECVSLSLASNRPNIRSIQTSRAPVSPPD
WRHQSKDPCVTSAHIMSVAAKEGQLTTSDSNSKELDQGTSDLRQILMKPKTITLPGGGSS
APTNLPSLRDQNPSESNPAITAALHNRTPLPESKTPTHSVPPIVRTPSTLPGETKSVISV
IASTATSVISRVCNPPETEEKPNLIIGNPSMDVTLPKTAYRPSKDDGGPYHGATFSSGSC
SGLRVNTSEGVVVLSHSGQKTEGPLRISAKISQIPQATAGDIESQQLVPIPQIKQDVYSH
SQSGHQKGSSQTDHGHPGKLQSALSSIKQESGSCSLEKMDSAYQAGPQGVVKRLPQGNQQ
VMGYHQDYLQLKHQKKMENVDPHGTDGAKPSWTSTVSPAISPHLPSPPGNHVGFVTSTGD
RGPSHLGSIKQEPRSPRKSGHSHPSFTKVSSPLGSSSPKGIPVMISSALNPMQQYITGVH
HPEQSVIMPPHNVPGGVGRMSPHCVSQSITVGHLVQGEVRVNTPPLSVMNYVHSEKLASP
WSGSLQPRSSSPQAVSRDKVLKVNHGSLRGHEGEQDESRHFHQAGRPSATLPSDTRGALR
TNMETFITQRDMRVHRHQQGERLTLDPHSGHIQETLPPSLSPRAHMLPKGVSEKDIKSLE
AKRPHSPVIQKDGIMAIRQSGAAIASPQRVSLMPPGPSGSFSEYSGMYPNRMHSQIPDAP
VGHNQPPLNVTPSMGAELQAKPDGKMTQTVNMVQLLTKYPIVWQGLLALKNDTAAVQLHF
VCGNKALAHRSLPLQEGGALLRIVQRMRLEASQLESVARRMTGDSDFCLLLALPCGRDQD
DVINQTQALKAAFINYLQAKLAAGIINIPNPGSNQPAYVLQIFPPCEFSESHLSQLAPDL
LNRISSISPHLMIVITSV
NT seq
9417 nt
NT seq
+upstream
nt +downstream
nt
atggttcgggaaaccagacacctctgggtgggaaatttacccgaacatgttcgcgaggag
aaaatcatggagcattttaaaaggtatggccgcgtggagagcgtcaaggttctgcgaaag
cgagggtcagagggcggtgttgcagcctttgtggattttgtggatatcaaaagtgcacag
aaggctcacaatgctgtcaataagatgggagacagagaccttcggactgactacaatgag
ccggggtcagtccccagtgctgtgcggggcctcgaagacagctccccctccggcagtcga
gacgttgcaggattccctaggggaacagttggcccagtgtttggcccacctgtgtcccta
cacacccgagagggacgttttgaacggagaatagatggtagctcagaaagccgcgaacgt
gcttatgatcacagcccatatggccaccatgagcgcagcgggacttttgacagacaacgt
cactacaacgctgattattaccgcgatcgcccagtgtttgcacccgccggccccggcagc
agtgccatcggagggagttttgaggcagcagacccacattttgactctagaatacgagac
ccatttacccttaccaattcaacacggcgagacctctacagagatgacagggggagacgt
gttgatcgatcttatcaccaccgtcgaagcagatcatctcattcctcccagtcgaggcat
ccgtctcctcagcggaccgcagggcaaacttcaaaaacccctcattctcctaaaagaacc
cctttgtcccctggaagaggcccaaggtcgagatctcaaagcagatcttcaagctccgac
tctgtcagcagcaccagcagcacaggcagtggcagtgactcaaacagcagctccagcgat
ggttcccgggcccgctccgttcagtcgtcggctgctccccagacttgtttagtgatggac
tctgaagagcctcggagaagctttgggattaaagtgcaaaacttaccagtgcgctccaca
gatacaagtttaaaagatggactcttccatgaattcaagaaatatgggaaagtgaattca
gtgcagattcatggcgcatcagaggaccgctatggattagtgttcttcagacagcaagag
gaccaagagaaagccctcagcgtctccaagggaaagctgttctttggcatgcttattgag
gttacagcctggaatggtccagaaacagagaatgaaaatgactacagaccgttagatgga
cgcctagacgagttccaccccaaggctacaaggacgctgtttataggcaaccttgaaaag
accaccagttatcagcaactcctggacatttttcagcgctttggagaaattgttgacatc
gacatcaagaaagtaaatgggattcctcagtatgcctttgtccagtactctgatattggc
agcgtttgcaaggccataaagaaaatggatgcagaatatttggggaacaataggcttaag
cttggttttgggaagagtatacctactacatgtgtttggcttgatgggttgacccccaac
atcacagagcaatacctcacacggcatttcatgcgttacgggcacgtagttaaagtcgta
tttgacagaataaaggagatggcgcttatcttgtacaacaacacggattttgctcaggca
gctgtgcgggagaccaaaggctggaagatcggtggtaataaaattaaggtggattttgca
agtcaggagagccagaatgcattttaccgctcaatgcaagcctctggacaagacattaga
gacttttatgaagttccaccagaacgacgagaggatcgcagacctccttatcatgagttt
acagcagagagagcttactatgagaatataagaaccactggcctttatccagaggaagct
cgcagagagtatgccgcacgtagcagagagcgttttcctgaactggagcattatcaggga
gaacactttgacccacgttatcatgaggatccaagagactacagggattaccgagacccc
tttgagcaggacatcagaaaatatacctacattcaaagagagcgagaaagagagcgggag
cgttttgaggctgatcgcagcaggtggagcccatcgcaaagaagagctgtcactcccaca
atttccccttctccatccgaacgtgctgccagagactcagaacggcgtgtttacagccag
tcttcagagaggagcggcagcgtgagctccatgtcacctccacatttggacaaatctgaa
aagaccttgctagatcatgcagcgaagagtgagaagagcgctcagcccgatcgcatggca
ggggcagagaaaatcaaacgtccaaaaagaaaagataaaactgacaaagaaaagactgaa
aagaataaatcaaggaaaggaaagggtcagtccccggctagccagataccagaaacagag
ccggatgctgcttttgatggaggaagaggaaggggatcagaccaagatgttcatgagaaa
ccgaaatctaaggtggatggagacgctctgtctggaaaccagttaacagcttctcaagac
tctgtaaaaactgaaacgactaaaggggatattgcagagctagacggaaaacccaaactt
aaaaaacaacccaagtctgatattggaaacgatggaaaggattcagcagtggattcagat
cgcctcgctgcaagaaaaaggcgctttggggatttaggtggcaagactgttcgtcagaaa
agaagcaggcatgaggaggaggatggcagtcagtcatcagacttgggctccagtaccaca
tttgtgaaagaaccagacgtagacaaacacaaagatcctcagcgacgagatgcacgactc
aaaacagaaaaaagtgtcactcaaaaggatggactagaggatctcaggggacaaagagaa
aaatccgaaggttctgcagatctgccagagtcaaaacgacaacaaggaagcacttcctcc
aggagggtctcactagaggggaattcagatcaaagcattttaagagagcaagaacaaact
gctgcattcaagcctagtcagaatgctgaaactaataaaaacgccaagactaaagaagac
catgttgacattgatctctctcagagttaccgcaagcagatggagcaaaacagacgttta
cacatgcagcagcagcaacagcgcgagtctgacaaactgaaaaaagcagaaagtctgcta
aaaaacgaaactgaagacctggaacatcgtagccttgtgcatgaagttggtaaaccacct
gaggatgtcacagataattttccgtctcacaagctgtctgaccagtttgaagccgagccc
gggataaagagagagcgtttctataggagacaaaaaagtgaagaccctgactggaatagt
accccttctccaggacaccaagttttctctcagcatgctgatgaggacttcatggatgcc
tctctgaaggagttaagtcgaaacaatcagaagattcacccagaacttgaacttttggtc
aaaaggacccacaacacacaggtgaacaagacaaacacccccattaatattggggaagaa
gatcaacaaaagaggtgggagagcagagttaagcaggacctgctacccaacctgaacttt
tctagaggcttgggcaaaaaccttcacaaccgcaagccctcagaatacggcctctggcat
gatttggagcctggggaagtgagatcagactctgaagaggatagagagaacaaacccctc
tctcctgctccctccacctctatgcctttttctgagaggccgagacctgatcggttttca
gacccaaagctggctcaccttgaaagaaacaaattctactcgttcgcacttgaccagact
atcacccccgatactaaagctctactggaacgagcaaagtctttgtcctcttctcgtgag
gataactggtcatttttagattacgattcccactttgtgaatttccgaagccagaaagac
acagagaaagtagaatcagcaccaagacctacaccttcctggtacatgaaaaagaaaaag
atacgaagtggatctgaggacaaactggatgacaggaaagaagagcccaagccggaggaa
caggaacgcagagagcttttcgcttcacgtttccttcatagcgctgtgtttgagctggac
tctagacgacttcaacaccttgagcgcaaatacgaagagttggagcacatgctgaaccaa
caagctagtcagcaaggagcagagggagaacttgagaccggcccagttgtcctctttcac
agccgttttctggagctcacgcaactacaacaacaaaaaaacaagagtcagcagctgcag
gaggataaaggaaacacagtttgtacaagtgaaaataaagaggaaaaaccatctgagcag
gaacaacaagatttacggtctaatgacatgccagaatctagtgtggcagctgaaatcaaa
cccatcagtcctgttgaacaagttgctcctgaaccaaaactgactcccaatcttgttatt
cagtctgcaaacaaagacacacctttttcacaccagaaatgtgtgctaccaactccaccc
gctgatgtgtgcccacctatgtcttttacaaaagaggagacaaaggaagaagtaaaagaa
agtgaagatgttgtaccaatgcactgttcaccaactgagaccttaaaatctgaacctgca
cctgaaactgttcctgaaactaacatttctgaggagaacctggaatttcttgaagaggat
gcaaagcctttaattgacgaacaaacaaatgaccctggttctcatgaagagttggttagc
agatcagagccagagccaagtcctgagatgccacagccagaagtgcctacagctagtagt
ccagtacaactcagtgttgctgaagaagcagatttaatcaaagaagatcctctttccaca
tgtcaaaaaacagtagagtcagaaggagagaagaaacttgaacaagtgagtaaagaagag
atttctgttgatagtgatgcaattgaagagccagtctcctttcaaaaagaaaataaaaca
aaagaaattaaaactaaaaaaggcaggcaatctccagctcaagttcctttaacatctgtc
tctgagaaacaagctacacgcaagagtgagcgcatcgacaaagataagctgaagcgtggc
tcatccccaagagctgaaacaaagtcttcagccaagtctccaactcccggatcagatcat
gatcattcggagcagagcatcccgataagtagagcaagaactcgaagaaatgtaaaatct
gtttatgcaaccccagtggaagacgatgcaccaactcgtggcaaggaaactgagtcacct
cgctctgcacgaaagcggggtacagagaaagaagctgtgcagcacagcaccgagtcggaa
ccaccgactccagcgccagcaaaacaacgtgggcgtcctcccaaaaaccgcaaaccgatt
gaagagatttcagctgcaaaaacagagaaaataaaaatggataaggatgcagattcaaat
gagtcggagaacggcgaacgggtttcaagagttgctaaggggaaaatgtccccttatctc
acaaagggttcctcaaatccaataccctcagtcccaggctctaagaaaggggacaaaact
gaaacggctgatgagaatcaagtaatacatttcacagaagcagaagatttgtcttcgcaa
cattcgtcatcttcaggcaaagactcttcagtaaaatcagatgtaaagaaaggctcagaa
ctggataaagacgttcatgaaaaattatgtgaggagaaatcgaatggaaaagaaacagat
tcactgctgggtgaggagaaacctgccccagagaaagagaagatcataaaaggaaaagtc
aaggctccaaagcctcatgtttttagggacctccaagtcatactggatgtcaaagaggtc
aaagatcacgtttccaggtgcactactgccaacaaagagtgccctaatgaagaaaaagag
aagaaggatgtagacgcctcaaagagctcttccctacaggagcgtgaattggagcaggca
gttgagaacatcgccaaacttaccgaaccggctttgccaacagaactaccaactcctcct
gtccctcctgcagaggtaaaaagtgaccctgaggaggaaaagccttgtaatcctgccagt
gagacagagctgatggctgccattgactcaataacaggcgaagatgtaagtgtacctctc
accccagccgctccagttagcacagaagtttgttcagaacctgaggtccaggagtttgtc
ccaccggtcaaggttgaagaacctgaaaccgcactgcaagaggaagccgtcttctcaaat
actcccaaaaagagttacaagggaaggcccaaaacacctaaacgccctaaagccccaaag
catgcacgaaaagatgtgaaagaagaattaagtgaggagttgacggtgcctttagccgag
agtacagcttctgatgttaaggttgtggctgagaagcctccatctgctgcagctgctgca
gttatcactcctacgacctggaaatcggaagctgaacttccagctgtgaaggcagcagaa
tcggagttgccgtcgcctgttgaagagcaaacacaagctgtgaaacccacacacccccag
gctaagagccccatataccctcaacagctaccagctgagtgtgtttctctgtctctggcc
tccaacaggcccaacatcagatccattcaaaccagccgagcgcctgtttctccacccgac
tggcgacaccagtctaaggatccatgtgttacctctgcacatataatgtcagtagcagcc
aaggaaggccagctgaccacttctgactccaacagcaaagagctagatcaaggcacaagt
gacttgagacagattctcatgaaacctaaaacaattactctcccaggaggaggaagttct
gctccaaccaatctgcccagcctccgagatcagaatccatctgaaagcaatcctgccatc
acagctgctcttcacaacagaaccccgctccctgagagtaaaacgccgactcattcagtt
ccacctattgtccgaacaccctccacgttacctggagagactaaatctgtgatctccgta
attgcatctacggcaacttctgttattagtcgcgtttgcaacccccctgagactgaggaa
aaacctaatctaattattggaaatccctccatggatgtgactctgcccaaaacggcctac
aggcccagcaaagacgatggcggaccttaccacggcgccacgttcagttctgggtcttgc
tctggtctgcgagtaaacacgtctgaaggagtggtggtgctaagccactcaggccagaaa
acagaaggacccctgaggatcagtgccaagattagtcaaatcccacaagcaacagccggt
gacattgaatctcaacaattggtgccgattccccagattaaacaagatgtttacagccat
tctcagtcgggacatcagaaggggtcttcacaaactgatcatgggcatcctggtaaactc
caatcagctctgtcttcaattaagcaggaaagcggcagctgcagtttagaaaagatggat
tcagcttaccaggcggggccccaaggagtcgtgaagcgtctcccgcaaggtaaccagcag
gtaatgggttaccaccaagactacctgcaattaaaacaccaaaagaagatggagaatgtt
gatcctcatggtacagatggagctaagccatcttggacctccactgtaagccctgctata
agcccacatttaccatctccccctgggaaccatgtgggcttcgtcacatccactggtgac
agaggtccgtcgcatcttggtagcatcaaacaggaaccacggtccccgagaaagtcagga
cattctcatccttctttcaccaaggtgtcttcgcctcttggctcctcctcacccaagggg
atccctgtaatgatatcctctgctctcaaccctatgcagcagtatatcactggtgtccac
cacccagagcagtctgtcatcatgccacctcacaacgtgcctggaggtgtgggacgaatg
tctcctcactgcgtctcccagtccattacagtgggtcatctggttcagggggaggtccgg
gtcaacacaccacctctgtctgtgatgaactacgtccatagcgagaagcttgcctctcct
tggtctggttccctgcagccgcggtcgtcctccccccaggctgtcagcagggacaaagtc
ctcaaggtcaaccacggttctttgcggggccacgagggcgaacaggacgaatccagacac
ttccaccaagctgggagaccatccgccaccctgccgtcagatactcggggagctttgagg
actaacatggaaacgtttatcactcagagagatatgcgagtgcaccggcaccagcagggg
gagcgtctgacactggacccccattctggacacattcaagaaactctcccgccttcttta
tctccgagagctcacatgttgcccaaaggcgtgtctgagaaggacataaagtcgctggaa
gcaaagaggccgcactctcctgtaattcaaaaggatggaataatggcgatccggcagtct
ggcgctgctattgcgtcacctcaacgggtttccctgatgccaccgggacccagcgggtcg
ttctccgagtactcaggaatgtacccaaaccgcatgcattctcagatcccggatgcccct
gttgggcacaaccagccgccgttgaacgtcactccgtctatgggtgcagaactccaggct
aaaccagatggaaagatgacccagactgttaatatggtgcagttgcttacgaagtaccct
atagtgtggcagggccttctagcactgaagaacgacacagctgctgtccagctgcatttc
gtctgtggaaacaaagctctggctcatcgatcgctgcctttgcaagaaggaggtgctctg
ctcaggattgttcagaggatgagactggaggcctctcagttggagagtgtagccagaaga
atgacgggtgacagtgatttctgtcttctcctcgctttgccttgtggacgagatcaagac
gatgtcataaaccaaactcaagctcttaaagctgcattcatcaactacctgcaggcaaaa
ctggcagctggtatcatcaatatccccaatccaggttccaatcagcccgcctacgtgctc
cagatttttccgccctgtgagttttccgagagccacttgtctcagctggcccccgacctt
ttgaacaggatctccagcatctcgccacacctcatgatcgtcatcacctctgtgtga
DBGET
integrated database retrieval system
