Xiphophorus hellerii (green swordtail): 116711903
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Entry
116711903 CDS
T07363
Symbol
dsel
Name
(RefSeq) dermatan-sulfate epimerase-like protein
KO
K01794
chondroitin-glucuronate 5-epimerase [EC:
5.1.3.19
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe00532
Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
xhe01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
116711903 (dsel)
Enzymes [BR:
xhe01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.19 chondroitin-glucuronate 5-epimerase
116711903 (dsel)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Sulfotransfer_3
DUF4962
Sulfotransfer_1
Sulfotransfer_4
Rit1_C
Motif
Other DBs
NCBI-GeneID:
116711903
NCBI-ProteinID:
XP_032407409
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Position
21:18785987..18791806
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AA seq
1204 aa
AA seq
DB search
MAYMWVAHLLFLLPLLRVGTAFSGVFNTTDRDLFTDDSPQVKLEQWKLHSADSHPNLYFN
QADVLHLRQRSSTTHSYIFKVIRAAVLTMLSNAPSYIPPAKHEEFTSKWNEIYGNNLPPL
ALYCLLCPEDSAALQFLLKFMDRMANYPDWKVTSAPNDEVPTAHSLTGFATAYDFIYSFL
DDSRRDAYLKKIRSETEALYELSKYRAWGKQYLQNHQTTNILAILTGAIVVGSHNDPESM
IWKQVSVNYMEKTMFLLNHIVDGSLDEGVAYGSYTAKSIMQYVFLAQRHFNIDNMQNNWL
RGHFWFYYATLLPGFQRTVGIADSNYNWFYGPESQLAFLDTFVMKNGTGNWLAQQIRKHR
PKDGPMGQSSAQRWATLHTEYIWYNSHLTPQPPHDFGKARMHIFSNWGVVTYGAGLPAGQ
SNTFVSFKSGRLGGRAVYDIVHDKPYSWVDGWNSFNPGHEHPDQNSFTFAPNGQVFVSEA
LYGPKYSYLNNVLVFSPSPTSQCNSPWEGQLGECAKWLRWTDEGVGDARGEVIVASEHRD
TMFVSGEAVSAYSAAMRLKSVFRALVLLNSQTLLVLDHVEKWADSPVKSLSAFFHNLDID
FKYVPFRFMDKYNGAMMDVWDAHYKMFWFDSQGHSPETRIQEAEQAAEFKKRWTQYVNVT
FPMTGAVSRVAYVLHGPYVKVSNCRFIDNSKNGVRLSLTINNTEKIVSIVTNYKDIGARL
AYIGFGGHCKVEDRYQITRYGLGTQHIPKQISNDNQLFDIGFTLNVIAGVVLCVAIGFLT
MQRKFYVCFSRLMRYALLSVLLLWIVELLFVSNSCDQLLCGVKWKSADTKSVVSKQIRLY
EQHRLPLPTVVITALPGSGSEILKHLFYNNSDFVYIRVPTEHVDIPETEFEFDSLVDTCE
WSRTDAVHGRFKIIQSWLHSLVHNTKLHLQNIQLAEGSRVKQPQRASPSKDRKKRSRRRE
PASELKGRLRASLDRDAEYVREMRRHVAEYPNAQVVLNMRSGSWTLKLPFIQEVVGVSLR
AVYLVRDPRAWIYLMVYNSKPSLYSLKNIPQHLSLIFKEDSVRGGCPAIAPEFKTIQWLL
SRSETNPILILAHLWLAHTAAALRVAESLPEDSYLRVRFEDVVSFPQETAETIHTFLGVP
MSPAALNQLTFTTSTNLYNLMYEGDISPANINVWRQKMPRKDVRLIEDICGGVMKRLGYA
RSAS
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggcttatatgtgggttgcacatctgctttttttactcccactcctcagagtggggaca
gctttctctggagtttttaacaccacagacagagaccttttcaccgatgactcgccacag
gtcaagctcgagcagtggaagctccactctgccgactcacaccccaacctatattttaac
caggcggacgtgttgcacttgaggcaaaggtcctccaccacccacagttacatctttaaa
gtcatccgggcagctgtgctcaccatgctttccaacgctccctcttacatcccccctgca
aaacatgaggagtttacaagcaagtggaatgagatctatgggaacaacttgccccctctg
gctctttactgcctgctgtgccccgaggactcggccgccctgcagtttcttttaaagttt
atggataggatggccaactacccagactggaaagtgaccagtgcaccgaatgatgaggtc
cccacagcccactctctgactgggtttgcaactgcttatgactttatttactccttcttg
gatgatagcaggagggacgcatacctcaagaaaattcgctcagagacagaagcactgtat
gagctctccaaatacagagcatgggggaaacagtatctccaaaaccatcaaaccactaat
atcttagccatcctaactggtgcaatagtggtgggctcacataacgacccagagtcgatg
atctggaaacaggtgtcagtgaactacatggagaaaaccatgtttctccttaatcatatt
gtggatggctctttggatgagggagtcgcttatggaagctacacagccaagtccataatg
cagtacgtatttttagcccaacgccattttaacatcgacaacatgcagaacaactggctg
cggggtcacttctggttttactatgctactctgctgccaggcttccagaggacagtcggc
atagcagactccaactacaactggttttatggaccggagagtcagctggctttcctcgac
acattcgtcatgaagaatggaacaggaaactggctggctcagcagattcggaagcacaga
ccgaaggatggacccatggggcagtcgtcggcccagcgctgggctacgctccacacagag
tacatctggtacaactcacatctcacaccacaacctccccatgactttggcaaagcaagg
atgcatattttctctaactggggggttgttacctatggagctggtcttcctgctggccag
agtaatacttttgtttcctttaagtctggacgtctgggcggccgtgcagtctatgacatc
gttcatgacaaaccttactcctgggtagatggttggaacagctttaatcctggccacgaa
cacccagaccagaactccttcacatttgctcccaatgggcaggtgtttgtatctgaagca
ctttatggtcccaaatacagctatcttaacaatgttttggtgtttagtccatctcctacc
agccaatgtaacagtccatgggaggggcagttaggggagtgtgccaagtggctgcgatgg
actgatgagggggtgggtgatgccagaggagaggtgattgttgcctctgagcacagggac
actatgtttgtgagcggggaggctgtgtcagcatactccgcagccatgagattaaaaagt
gttttcagagccttggttctgctaaactcccaaacgttgctggtgctcgaccacgttgag
aagtgggccgactcccctgtgaagtctctcagtgcttttttccacaacctagacattgat
ttcaaatatgttccctttagatttatggataaatacaatggtgccatgatggatgtgtgg
gatgctcattataaaatgttctggtttgacagccagggtcacagccctgaaaccagaata
caggaggcagagcaggctgcggagtttaaaaagaggtggacacagtatgtcaatgtcact
tttccaatgacaggcgcagtcagcagagtagcttatgtgttacatggcccatatgttaaa
gtgtccaattgtagatttatagataacagcaaaaatggtgtgaggctttctttaaccata
aataatacagagaagattgtttccatagttactaactataaagatattggagcaagattg
gcttatataggatttggcggtcactgcaaagttgaagatagatatcaaatcactagatat
ggccttgggacgcagcacatccctaaacaaattagcaacgataatcagctctttgacatt
ggattcactctcaatgtgatcgcgggcgttgttctctgtgtggccataggatttttgacc
atgcagagaaagttttatgtttgcttcagcagactgatgcgctatgccttgctctctgtg
cttctcctctggatagtcgagttgctgtttgtgtccaacagctgcgatcagcttctttgc
ggagtaaagtggaaaagtgcagacaccaaaagtgtagtaagcaaacaaatcaggttgtat
gagcagcaccggctcccccttcccaccgtggtcataacagctcttcctggatcggggtca
gaaatactcaagcaccttttctataataactcagactttgtttacataagggttcctact
gaacatgtggatattcctgagactgagtttgagtttgactcactggttgacacctgtgag
tggtcaaggacagatgctgtgcatggacggtttaagatcattcagagctggctgcattca
cttgtgcacaataccaagctgcacttgcaaaatatccagcttgcagagggcagcagggtc
aaacaaccccagagagcaagcccctctaaagacagaaagaaaagatccaggcggagggag
cctgcatctgagttgaagggcaggctgagggccagcctggacagagacgcagagtatgtt
agggagatgagacggcatgttgcggagtaccccaacgcccaagtggtcctcaacatgcgg
agtggcagctggacgcttaaactgcccttcattcaagaagtggttggcgtttccctgagg
gcagtctatttggtcagagaccctcgggcatggatttatctcatggtttataacagcaaa
cccagtctttactcactgaaaaacatcccacagcacctttccttgatattcaaggaggat
tctgtaaggggagggtgcccagcaattgcaccagagtttaaaacaatccagtggctgctg
tcccgatcagagacgaaccctatcctgatccttgctcatctatggctggctcacacggcg
gcagcacttcgagttgctgagagtctccccgaggactcctaccttcgagtgaggtttgag
gatgtggtcagcttcccccaggagacagcggagacaatacacacattcctgggagttcct
atgtcgccagcagccctcaatcagctgacatttaccacctccacaaacctgtacaacctc
atgtacgaaggagacatctcaccagcaaacatcaacgtatggaggcagaaaatgcctcga
aaggatgtcagacttatagaggatatatgtggaggtgtaatgaaaaggttgggctatgcc
aggtctgccagttaa
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